Factsheet for GSMUA_Achr5P18740_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	99.62	99.62
GSMUA_Achr11P...	Banana	cytosol	62.84	99.39
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	93.87	94.23
VIT_04s0023g03210.t01	Wine grape	mitochondrion	93.87	94.23
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	92.72	93.08
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	92.72	93.08
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	92.34	92.69
Solyc07g063890.2.1	Tomato	extracellular, unclear	92.34	92.69
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	92.34	92.69
EER96269	Sorghum	mitochondrion	92.34	92.34
Os12t0567700-01	Rice	nucleus, plasma membrane	92.34	92.34
KXG23748	Sorghum	mitochondrion	92.34	92.34
Solyc12g005330.1.1	Tomato	nucleus	91.95	92.31
Zm00001d019473_P001	Maize	plastid	91.95	92.31
CDX75555	Canola	cytosol	62.45	92.09
KRH28784	Soybean	mitochondrion	91.95	91.95
KRH76671	Soybean	mitochondrion	91.95	91.95
KRH69797	Soybean	mitochondrion	91.57	91.92
KRH08094	Soybean	nucleus	91.57	91.92
PGSC0003DMT400056142	Potato	cytosol	91.57	91.92
CDX72577	Canola	cytosol, mitochondrion	90.8	91.86
CDX69201	Canola	cytosol, mitochondrion	90.8	91.86
CDY47054	Canola	extracellular	90.8	91.86
Zm00001d030691_P001	Maize	mitochondrion	91.57	91.57
Zm00001d041568_P001	Maize	plasma membrane	91.57	91.57
CDY29217	Canola	cytosol	54.02	91.56
AT2G18020.1	Thale cress	cytosol, mitochondrion	90.42	91.47
TraesCS5D01G095400.1	Wheat	mitochondrion	91.19	91.19
TraesCS4D01G123700.1	Wheat	golgi	91.19	91.19
TraesCS5A01G082800.1	Wheat	mitochondrion	91.19	91.19
TraesCS4B01G128700.1	Wheat	mitochondrion	91.19	91.19
TraesCS4A01G189200.1	Wheat	mitochondrion	91.19	91.19
TraesCS5B01G088900.1	Wheat	mitochondrion	91.19	91.19
Bra010550.1-P	Field mustard	mitochondrion	90.04	91.09
CDY20905	Canola	mitochondrion	81.99	91.06
CDY25126	Canola	mitochondrion	81.99	91.06
CDY24796	Canola	mitochondrion	89.66	90.7
Bra039911.1-P	Field mustard	cytosol, mitochondrion	89.66	90.7
AT4G36130.1	Thale cress	mitochondrion	89.66	90.7
CDY38171	Canola	mitochondrion	81.61	90.64
Bra011664.1-P	Field mustard	cytosol, mitochondrion	88.89	89.92
CDX90658	Canola	extracellular	88.12	88.8
Bra024481.1-P	Field mustard	mitochondrion	86.97	88.67
Bra012864.1-P	Field mustard	mitochondrion	87.74	88.42
CDY35456	Canola	cytosol, mitochondrion	89.27	87.92
Bra017749.1-P	Field mustard	mitochondrion	89.66	87.64
Bra037242.1-P	Field mustard	mitochondrion	51.72	85.99
CDY38172	Canola	nucleus	18.01	85.45
CDY29006	Canola	mitochondrion	84.29	84.94
HORVU5Hr1G021730.2	Barley	cytosol	91.19	84.7
HORVU4Hr1G077020.1	Barley	mitochondrion	83.52	83.52
AT3G51190.1	Thale cress	mitochondrion	83.14	83.46
TraesCS4A01G007200.1	Wheat	mitochondrion	83.14	83.14
TraesCS4D01G296600.1	Wheat	mitochondrion	82.38	82.38
TraesCS4B01G297800.1	Wheat	mitochondrion	82.38	82.38
OQU78327	Sorghum	mitochondrion	81.99	82.31
EES18535	Sorghum	mitochondrion	81.99	82.31
CDY25127	Canola	cytosol	32.95	78.9
Bra039912.1-P	Field mustard	cytosol	25.67	74.44
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	36.02	63.51
CDY30333	Canola	extracellular	23.75	54.39
GSMUA_AchrUn_...	Banana	mitochondrion	28.35	16.89

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G18740_001	EnsemblPlants:GSMUA_Achr5P18740_001
EnsemblPlants:GSMUA_Achr5T18740_001	InterPro:IPR014722	InterPro:IPR014726	UniProt:M0SZQ3	HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold
PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33
InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000294D0FF	SEG:seg	:	:	:	:

Description

60S ribosomal protein L8 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18740_001]

Coordinates

chr5:-:20275565..20278301

Molecular Weight (calculated)

28316.4 Da

IEP (calculated)

11.719

GRAVY (calculated)

-0.460

Length

261 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFRSHT HHRKGPARFR SLDFGERNGY LKGVITEILH DPGRGAPLAR VTFRHPFRYK LQKELFIAAE GMYTGQFVYC GRKASLMVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVISHN PDNGTSRIKL PSGAKKIVPS NCRAMIGQVA GGGRTEKPLL KAGNAYHKFR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKAEKT S

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.