Factsheet for Bra024481.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29217	Canola	cytosol	60.16	100.0
Bra039911.1-P	Field mustard	cytosol, mitochondrion	96.48	95.74
AT2G18020.1	Thale cress	cytosol, mitochondrion	94.92	94.19
Bra037242.1-P	Field mustard	mitochondrion	57.42	93.63
Bra010550.1-P	Field mustard	mitochondrion	93.36	92.64
GSMUA_Achr11P...	Banana	cytosol	59.38	92.12
Bra011664.1-P	Field mustard	cytosol, mitochondrion	91.41	90.7
VIT_04s0023g03210.t01	Wine grape	mitochondrion	91.8	90.38
PGSC0003DMT400056142	Potato	cytosol	91.41	90.0
Bra017749.1-P	Field mustard	mitochondrion	93.75	89.89
KRH28784	Soybean	mitochondrion	91.41	89.66
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	91.02	89.62
Solyc12g005330.1.1	Tomato	nucleus	91.02	89.62
Bra012864.1-P	Field mustard	mitochondrion	90.62	89.58
KRH76671	Soybean	mitochondrion	91.02	89.27
Solyc07g063890.2.1	Tomato	extracellular, unclear	90.62	89.23
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	90.62	89.23
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	90.23	88.85
KRH08094	Soybean	nucleus	90.23	88.85
KRH69797	Soybean	mitochondrion	90.23	88.85
Zm00001d019473_P001	Maize	plastid	89.84	88.46
TraesCS5A01G082800.1	Wheat	mitochondrion	89.45	87.74
TraesCS4A01G189200.1	Wheat	mitochondrion	89.45	87.74
TraesCS4B01G128700.1	Wheat	mitochondrion	89.45	87.74
TraesCS4D01G123700.1	Wheat	golgi	89.45	87.74
KXG23748	Sorghum	mitochondrion	89.45	87.74
TraesCS5B01G088900.1	Wheat	mitochondrion	89.45	87.74
TraesCS5D01G095400.1	Wheat	mitochondrion	89.45	87.74
Zm00001d030691_P001	Maize	mitochondrion	89.45	87.74
Zm00001d041568_P001	Maize	plasma membrane	89.45	87.74
EER96269	Sorghum	mitochondrion	89.45	87.74
Os12t0567700-01	Rice	nucleus, plasma membrane	89.06	87.36
GSMUA_Achr11P...	Banana	mitochondrion	89.06	87.36
GSMUA_Achr5P18740_001	Banana	mitochondrion	88.67	86.97
HORVU5Hr1G021730.2	Barley	cytosol	89.45	81.49
Bra039912.1-P	Field mustard	cytosol	28.52	81.11
TraesCS4A01G007200.1	Wheat	mitochondrion	80.86	79.31
HORVU4Hr1G077020.1	Barley	mitochondrion	80.86	79.31
TraesCS4B01G297800.1	Wheat	mitochondrion	80.86	79.31
TraesCS4D01G296600.1	Wheat	mitochondrion	80.08	78.54
OQU78327	Sorghum	mitochondrion	77.73	76.54
EES18535	Sorghum	mitochondrion	77.73	76.54
Bra036831.1-P	Field mustard	cytosol	57.03	68.22
Bra040982.1-P	Field mustard	cytosol, mitochondrion	21.09	32.73
Bra004801.1-P	Field mustard	mitochondrion	21.09	25.23
TraesCS7D01G254900.1	Wheat	cytosol	0.39	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EnsemblPlantsGene:Bra024481	EnsemblPlants:Bra024481.1
EnsemblPlants:Bra024481.1-P	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726	UniProt:M4E6S6
InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691
PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000253EF97	:	:	:	:	:

Description

AT2G18020 (E=1e-142) EMB2296 | EMB2296 (embryo defective 2296); structural constituent of ribosome

Coordinates

chrA06:-:16088765..16090287

Molecular Weight (calculated)

27806.6 Da

IEP (calculated)

11.139

GRAVY (calculated)

-0.508

Length

256 amino acids

Sequence
(BLAST)

001: MLGWRWPKGA GSVFKSHTHH RKGPAKFRSL DYGERNGYLK DVVTEIIHDP GRGAPLARVA FRHPFRYKKQ KELFVAAEGM YTGQFLYCGK KATLVVGNVL
101: PLRAIPEGAV VCNVEHHVGD RGVLARASGD YAIVISHNPD NDTTRIKLPS GSKKIVPSGC RAMIGQVAGG GRTEKPMLKA GNAYHKYRVK RNSWPKVRGV
201: AMNPVEHPHG GGNHQHIGHA STVRRDAPPG QKVGLIAARR TGRLRGQAAA SAAKAD

Best Arabidopsis Sequence Match ( AT2G18020.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Arabidopsis Description

RPL8AEMB2296 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.