Factsheet for Bra036831.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012864.1-P	Field mustard	mitochondrion	73.36	60.62
Bra010550.1-P	Field mustard	mitochondrion	71.5	59.3
Bra039911.1-P	Field mustard	cytosol, mitochondrion	70.56	58.53
Bra011664.1-P	Field mustard	cytosol, mitochondrion	69.63	57.75
Bra024481.1-P	Field mustard	mitochondrion	68.22	57.03
Bra017749.1-P	Field mustard	mitochondrion	70.09	56.18
VIT_12s0134g00130.t01	Wine grape	cytosol, mitochondrion	20.09	50.59
Bra037242.1-P	Field mustard	mitochondrion	35.98	49.04
TraesCS5A01G274300.1	Wheat	mitochondrion	24.77	29.78
TraesCS4D01G043800.1	Wheat	plastid	17.76	24.68
TraesCS5D01G008500.1	Wheat	cytosol, mitochondrion	15.42	22.15
Bra040982.1-P	Field mustard	cytosol, mitochondrion	16.36	21.21
Bra039912.1-P	Field mustard	cytosol	8.41	20.0
Bra004801.1-P	Field mustard	mitochondrion	14.49	14.49
HORVU0Hr1G034040.1	Barley	cytosol	0.0	0.0
HORVU0Hr1G034600.1	Barley	cytosol	0.0	0.0
TraesCS4D01G043700.1	Wheat	cytosol	0.0	0.0
HORVU0Hr1G033410.1	Barley	cytosol	0.0	0.0
HORVU0Hr1G028650.1	Barley	cytosol	0.0	0.0
TraesCS5D01G008400.1	Wheat	cytosol	0.0	0.0
HORVU0Hr1G026950.1	Barley	cytosol	0.0	0.0
TraesCS5D01G219800.1	Wheat	cytosol	0.0	0.0
TraesCS5D01G345600.1	Wheat	cytosol	0.0	0.0
TraesCS6D01G080000.1	Wheat	cytosol	0.0	0.0
HORVU0Hr1G026900.1	Barley	cytosol	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EnsemblPlantsGene:Bra036831	EnsemblPlants:Bra036831.1
EnsemblPlants:Bra036831.1-P	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726	UniProt:M4F6X1
InterPro:NA-bd_OB-fold	PFAM:PF03947	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002542C67	:	:	:	:

Description

AT2G18020 (E=2e-046) EMB2296 | EMB2296 (embryo defective 2296); structural constituent of ribosome

Coordinates

chrA09:-:25553965..25554846

Molecular Weight (calculated)

24372.5 Da

IEP (calculated)

10.757

GRAVY (calculated)

-0.588

Length

214 amino acids

Sequence
(BLAST)

001: MGRVIRAQLR SLDYGERNGY LKDPGRGAPL ARVDFRHPIR YKKQKELFVA AEGMYTGQFL YCGKKATLVV GNVLPLRSIP EGAVVCNVEL HVGDRGAPAR
101: ASGDYSIVIA HNHDNDTTRW RKNREAHFLR QVTHAYHKYR VKRNCWPIVR GLAMNPVEHP HGGGNRQHIG HASTVRPYVI NQQVRKLVSL PREERVISEV
201: KLPHQQPSLN RLDL

Best Arabidopsis Sequence Match ( AT2G18020.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Arabidopsis Description

RPL8AEMB2296 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.