Factsheet for Bra017749.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47054	Canola	extracellular	95.51	98.84
CDX72577	Canola	cytosol, mitochondrion	95.51	98.84
Bra010550.1-P	Field mustard	mitochondrion	94.76	98.06
Bra011664.1-P	Field mustard	cytosol, mitochondrion	92.88	96.12
Bra039911.1-P	Field mustard	cytosol, mitochondrion	92.51	95.74
AT4G36130.1	Thale cress	mitochondrion	92.13	95.35
Bra024481.1-P	Field mustard	mitochondrion	89.89	93.75
VIT_04s0023g03210.t01	Wine grape	mitochondrion	89.89	92.31
KRH28784	Soybean	mitochondrion	89.51	91.57
Solyc12g005330.1.1	Tomato	nucleus	89.14	91.54
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	89.14	91.54
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	89.14	91.54
PGSC0003DMT400056142	Potato	cytosol	89.14	91.54
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	89.14	91.54
GSMUA_Achr11P...	Banana	cytosol	56.55	91.52
Solyc07g063890.2.1	Tomato	extracellular, unclear	88.76	91.15
KRH69797	Soybean	mitochondrion	88.39	90.77
KRH08094	Soybean	nucleus	88.39	90.77
Bra012864.1-P	Field mustard	mitochondrion	88.02	90.73
Bra037242.1-P	Field mustard	mitochondrion	53.18	90.45
KRH76671	Soybean	mitochondrion	88.39	90.42
GSMUA_Achr11P...	Banana	mitochondrion	88.02	90.04
Zm00001d041568_P001	Maize	plasma membrane	87.64	89.66
Zm00001d030691_P001	Maize	mitochondrion	87.64	89.66
KXG23748	Sorghum	mitochondrion	87.64	89.66
GSMUA_Achr5P18740_001	Banana	mitochondrion	87.64	89.66
EER96269	Sorghum	mitochondrion	87.64	89.66
Zm00001d019473_P001	Maize	plastid	87.27	89.62
Os12t0567700-01	Rice	nucleus, plasma membrane	87.27	89.27
TraesCS5B01G088900.1	Wheat	mitochondrion	86.52	88.51
TraesCS5A01G082800.1	Wheat	mitochondrion	86.52	88.51
TraesCS4D01G123700.1	Wheat	golgi	86.52	88.51
TraesCS4B01G128700.1	Wheat	mitochondrion	86.52	88.51
TraesCS4A01G189200.1	Wheat	mitochondrion	86.52	88.51
TraesCS5D01G095400.1	Wheat	mitochondrion	86.52	88.51
HORVU5Hr1G021730.2	Barley	cytosol	86.52	82.21
TraesCS4A01G007200.1	Wheat	mitochondrion	79.4	81.23
TraesCS4B01G297800.1	Wheat	mitochondrion	79.4	81.23
HORVU4Hr1G077020.1	Barley	mitochondrion	79.4	81.23
TraesCS4D01G296600.1	Wheat	mitochondrion	78.65	80.46
OQU78327	Sorghum	mitochondrion	77.9	80.0
EES18535	Sorghum	mitochondrion	77.9	80.0
Bra039912.1-P	Field mustard	cytosol	25.09	74.44
Bra036831.1-P	Field mustard	cytosol	56.18	70.09
Bra040982.1-P	Field mustard	cytosol, mitochondrion	20.97	33.94
Bra004801.1-P	Field mustard	mitochondrion	19.85	24.77
TraesCS7D01G254900.1	Wheat	cytosol	0.37	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EnsemblPlantsGene:Bra017749	EnsemblPlants:Bra017749.1
EnsemblPlants:Bra017749.1-P	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726	UniProt:M4DML4
InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691
PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0002540BDA	:	:	:	:	:

Description

AT2G18020 (E=7e-081) EMB2296 | EMB2296 (embryo defective 2296); structural constituent of ribosome

Coordinates

chrA03:+:30188501..30189804

Molecular Weight (calculated)

29006.3 Da

IEP (calculated)

11.285

GRAVY (calculated)

-0.448

Length

267 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNVY LKGVVTEIIH DPGRGAPLAR VAFRHPFRYK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRAIPEG AVVCNVEHHV GDRGVLARAS GDYAIVISHN PDNDTTSYNL HIGFGRVKLP SGSKKIVPSG CRAMIGQVAG GGRTDKPMLK AGNAYHKYRV
201: KRNCWPKVRG VAMNPVEHPH GGGNHQHIGH ASTVRRDAPP GQKVGLIAAR RTGRLRGQAA ALASKQE

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.