CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96269	Sorghum	mitochondrion	100.0	100.0
Zm00001d041568_P001	Maize	plasma membrane	99.23	99.23
Zm00001d030691_P001	Maize	mitochondrion	99.23	99.23
Os12t0567700-01	Rice	nucleus, plasma membrane	98.47	98.47
TraesCS4D01G123700.1	Wheat	golgi	97.32	97.32
TraesCS4B01G128700.1	Wheat	mitochondrion	97.32	97.32
TraesCS4A01G189200.1	Wheat	mitochondrion	97.32	97.32
TraesCS5A01G082800.1	Wheat	mitochondrion	97.32	97.32
TraesCS5B01G088900.1	Wheat	mitochondrion	97.32	97.32
TraesCS5D01G095400.1	Wheat	mitochondrion	97.32	97.32
VIT_04s0023g03210.t01	Wine grape	mitochondrion	95.79	96.15
GSMUA_Achr11P...	Banana	cytosol	60.15	95.15
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	94.64	95.0
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	94.64	95.0
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	94.25	94.62
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	94.25	94.62
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	93.87	94.23
Solyc07g063890.2.1	Tomato	extracellular, unclear	93.87	94.23
KRH08094	Soybean	nucleus	93.1	93.46
KRH69797	Soybean	mitochondrion	93.1	93.46
Solyc12g005330.1.1	Tomato	nucleus	93.1	93.46
KRH76671	Soybean	mitochondrion	93.1	93.1
KRH28784	Soybean	mitochondrion	93.1	93.1
PGSC0003DMT400056142	Potato	cytosol	92.72	93.08
GSMUA_Achr11P...	Banana	mitochondrion	92.72	92.72
GSMUA_Achr5P18740_001	Banana	mitochondrion	92.34	92.34
Bra039911.1-P	Field mustard	cytosol, mitochondrion	91.19	92.25
CDY29217	Canola	cytosol	54.41	92.21
CDY25126	Canola	mitochondrion	82.76	91.91
CDY20905	Canola	mitochondrion	82.76	91.91
AT4G36130.1	Thale cress	mitochondrion	90.8	91.86
AT2G18020.1	Thale cress	cytosol, mitochondrion	90.8	91.86
CDY38171	Canola	mitochondrion	82.38	91.49
Bra010550.1-P	Field mustard	mitochondrion	90.42	91.47
CDX69201	Canola	cytosol, mitochondrion	90.42	91.47
CDY47054	Canola	extracellular	90.42	91.47
CDX72577	Canola	cytosol, mitochondrion	90.42	91.47
CDY24796	Canola	mitochondrion	90.04	91.09
CDX75555	Canola	cytosol	61.69	90.96
HORVU5Hr1G021730.2	Barley	cytosol	97.32	90.39
Bra024481.1-P	Field mustard	mitochondrion	87.74	89.45
Bra011664.1-P	Field mustard	cytosol, mitochondrion	88.12	89.15
CDX90658	Canola	extracellular	87.74	88.42
CDY35456	Canola	cytosol, mitochondrion	89.66	88.3
Bra012864.1-P	Field mustard	mitochondrion	87.36	88.03
Bra017749.1-P	Field mustard	mitochondrion	89.66	87.64
CDY38172	Canola	nucleus	18.39	87.27
Bra037242.1-P	Field mustard	mitochondrion	52.49	87.26
CDY29006	Canola	mitochondrion	83.91	84.56
EES18535	Sorghum	mitochondrion	81.99	82.31
OQU78327	Sorghum	mitochondrion	81.99	82.31
AT3G51190.1	Thale cress	mitochondrion	81.99	82.31
CDY25127	Canola	cytosol	33.72	80.73
Bra039912.1-P	Field mustard	cytosol	26.82	77.78
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	38.31	67.57
CDY30333	Canola	extracellular	24.52	56.14
EER90317	Sorghum	mitochondrion	29.5	17.74
OQU80748	Sorghum	endoplasmic reticulum, extracellular	22.61	16.16

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EntrezGene:8057923	UniProt:C5X4C8
ProteinID:EER96269.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	InterPro:IPR014722	InterPro:IPR014726
EnsemblPlants:KXG23748	ProteinID:KXG23748	ProteinID:KXG23748.1	HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold	PFAM:PF00181
PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc	InterPro:Ribosomal_L2_dom3
SMART:SM01382	SMART:SM01383	EnsemblPlantsGene:SORBI_3008G135000	SUPFAM:SSF50104	SUPFAM:SSF50249	unigene:Sbi.18039
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001A834A3	RefSeq:XP_002459748.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:56354147..56356159

Molecular Weight (calculated)

28221.2 Da

IEP (calculated)

11.571

GRAVY (calculated)

-0.499

Length

261 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTDVIH DPGRGAPLAK VTFRHPFRYK HQKELFVAAE GMYTGQFVYC GRRATLSIGN
101: VLPLRGIPEG AVVCNVEHHV GDRGVFARAS GDYAIVISHN PDNGTSRIKL PSGAKKIVPS SCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA T

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.