CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90658	Canola	extracellular	95.37	95.37
CDY25126	Canola	mitochondrion	81.47	89.79
CDY20905	Canola	mitochondrion	81.47	89.79
CDX69201	Canola	cytosol, mitochondrion	89.19	89.53
CDX72577	Canola	cytosol, mitochondrion	89.19	89.53
CDY47054	Canola	extracellular	89.19	89.53
CDY38171	Canola	mitochondrion	81.08	89.36
AT3G51190.1	Thale cress	mitochondrion	89.19	88.85
CDY24796	Canola	mitochondrion	88.42	88.76
VIT_04s0023g03210.t01	Wine grape	mitochondrion	87.26	86.92
CDX75555	Canola	cytosol	59.07	86.44
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	86.49	86.15
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	86.49	86.15
CDY35456	Canola	cytosol, mitochondrion	88.03	86.04
KRH28784	Soybean	mitochondrion	86.49	85.82
CDY29217	Canola	cytosol	50.97	85.71
KRH76671	Soybean	mitochondrion	86.1	85.44
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	85.71	85.38
PGSC0003DMT400056142	Potato	cytosol	85.71	85.38
Solyc12g005330.1.1	Tomato	nucleus	85.71	85.38
KRH69797	Soybean	mitochondrion	85.33	85.0
KRH08094	Soybean	nucleus	85.33	85.0
Solyc07g063890.2.1	Tomato	extracellular, unclear	85.33	85.0
GSMUA_Achr11P...	Banana	mitochondrion	85.33	84.67
GSMUA_Achr5P18740_001	Banana	mitochondrion	84.94	84.29
EER96269	Sorghum	mitochondrion	84.56	83.91
Os12t0567700-01	Rice	nucleus, plasma membrane	84.56	83.91
KXG23748	Sorghum	mitochondrion	84.56	83.91
Zm00001d019473_P001	Maize	plastid	84.17	83.85
Zm00001d041568_P001	Maize	plasma membrane	83.78	83.14
TraesCS4A01G189200.1	Wheat	mitochondrion	83.78	83.14
TraesCS4B01G128700.1	Wheat	mitochondrion	83.78	83.14
TraesCS4D01G123700.1	Wheat	golgi	83.78	83.14
TraesCS5A01G082800.1	Wheat	mitochondrion	83.78	83.14
TraesCS5B01G088900.1	Wheat	mitochondrion	83.78	83.14
TraesCS5D01G095400.1	Wheat	mitochondrion	83.78	83.14
Zm00001d030691_P001	Maize	mitochondrion	83.78	83.14
GSMUA_Achr11P...	Banana	cytosol	52.9	83.03
HORVU4Hr1G077020.1	Barley	mitochondrion	81.85	81.23
TraesCS4B01G297800.1	Wheat	mitochondrion	81.85	81.23
TraesCS4A01G007200.1	Wheat	mitochondrion	81.85	81.23
OQU78327	Sorghum	mitochondrion	81.08	80.77
EES18535	Sorghum	mitochondrion	81.08	80.77
TraesCS4D01G296600.1	Wheat	mitochondrion	81.08	80.46
HORVU5Hr1G021730.2	Barley	cytosol	83.78	77.22
CDY38172	Canola	nucleus	15.06	70.91
CDY25127	Canola	cytosol	29.34	69.72
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	32.05	56.08
CDY30333	Canola	extracellular	19.3	43.86
CDX99954	Canola	cytosol	20.08	36.62
CDX91813	Canola	nucleus	22.01	30.48
CDX95206	Canola	cytosol	22.01	30.48
CDY28606	Canola	cytosol	22.01	30.48
CDX79785	Canola	mitochondrion, plastid	19.3	23.36
CDY17889	Canola	mitochondrion, plastid	19.3	23.26
CDX83442	Canola	mitochondrion, plastid	19.3	23.15
CDX95586	Canola	mitochondrion, plastid	19.3	23.04
CDY21179	Canola	plastid	22.01	21.43
CDY30453	Canola	mitochondrion	10.81	17.07
CDX95204	Canola	cytosol, plastid	11.2	16.11
CDY23415	Canola	plastid	11.97	11.65
TraesCS7D01G254900.1	Wheat	cytosol	0.39	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:A0A078GU27	UniProt:A0A078GU27
EnsemblPlants:CDY29006	ProteinID:CDY29006	ProteinID:CDY29006.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00041735001
InterPro:IPR014722	InterPro:IPR014726	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158
ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104
SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EE74F9	SEG:seg	:	:

Description

BnaC07g32120DBnaC07g32120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU27]

Coordinates

chrLK032229:-:157045..157996

Molecular Weight (calculated)

27992.0 Da

IEP (calculated)

11.363

GRAVY (calculated)

-0.434

Length

259 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAAGSVFKSH THHRKGPAKF RSLDYSERNG YLKGVVTEII HDPGRGAPLA RVDFRHPFRY KKQKELFVAA EGMYTGQLLY CGKKATLVVG
101: NVLPLRSIPE GAVVCNVELH VGDRGAMARA SGDYAIVISH NPDNDTTRVK LPSGAKKIVQ SGCRAMIGQV AGGGRTEKPL LKAGRAYHKY RVKRNCWPIV
201: RGVSMNPVEH PHGGGNHQHI GHASTVNRYK SAGAKVGQIA ARRTGRRRGA AAVAAAKAV

Best Arabidopsis Sequence Match ( AT2G18020.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Arabidopsis Description

RPL8AEMB2296 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.