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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:mitochondrion
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
 plasma membrane: 18260611
plasma membrane: 18557835
nucleus: 19621931
plastid: 21433289
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER96269 Sorghum mitochondrion 98.47 98.47
KXG23748 Sorghum mitochondrion 98.47 98.47
Zm00001d019473_P001 Maize plastid 97.7 98.08
Zm00001d041568_P001 Maize plasma membrane 97.7 97.7
Zm00001d030691_P001 Maize mitochondrion 97.7 97.7
TraesCS5D01G095400.1 Wheat mitochondrion 97.32 97.32
TraesCS5B01G088900.1 Wheat mitochondrion 97.32 97.32
TraesCS5A01G082800.1 Wheat mitochondrion 97.32 97.32
TraesCS4D01G123700.1 Wheat golgi 97.32 97.32
TraesCS4B01G128700.1 Wheat mitochondrion 97.32 97.32
TraesCS4A01G189200.1 Wheat mitochondrion 97.32 97.32
VIT_04s0023g03210.t01 Wine grape mitochondrion 95.79 96.15
VIT_19s0014g04760.t01 Wine grape cytosol, mitochondrion 95.02 95.38
VIT_12s0134g00060.t01 Wine grape cytosol, mitochondrion 94.64 95.0
GSMUA_Achr11P... Banana cytosol 59.77 94.55
KRH76671 Soybean mitochondrion 93.87 93.87
PGSC0003DMT400049608 Potato cytosol, mitochondrion 93.49 93.85
Solyc10g006580.2.1 Tomato nucleus, plastid, unclear 93.49 93.85
Solyc07g063890.2.1 Tomato extracellular, unclear 93.1 93.46
PGSC0003DMT400064385 Potato cytosol, mitochondrion 93.1 93.46
Solyc12g005330.1.1 Tomato nucleus 93.1 93.46
KRH28784 Soybean mitochondrion 93.1 93.1
PGSC0003DMT400056142 Potato cytosol 92.72 93.08
GSMUA_Achr11P... Banana mitochondrion 92.72 92.72
KRH69797 Soybean mitochondrion 92.34 92.69
KRH08094 Soybean nucleus 92.34 92.69
GSMUA_Achr5P18740_001 Banana mitochondrion 92.34 92.34
AT2G18020.1 Thale cress cytosol, mitochondrion 90.8 91.86
Bra039911.1-P Field mustard cytosol, mitochondrion 90.8 91.86
AT4G36130.1 Thale cress mitochondrion 90.8 91.86
CDY20905 Canola mitochondrion 82.38 91.49
CDY25126 Canola mitochondrion 82.38 91.49
CDY47054 Canola extracellular 90.42 91.47
Bra010550.1-P Field mustard mitochondrion 90.42 91.47
CDX69201 Canola cytosol, mitochondrion 90.42 91.47
CDX72577 Canola cytosol, mitochondrion 90.42 91.47
CDY24796 Canola mitochondrion 90.04 91.09
CDY38171 Canola mitochondrion 81.99 91.06
CDY29217 Canola cytosol 53.64 90.91
CDX75555 Canola cytosol 61.3 90.4
HORVU5Hr1G021730.2 Barley cytosol 97.32 90.39
Bra011664.1-P Field mustard cytosol, mitochondrion 88.12 89.15
Bra024481.1-P Field mustard mitochondrion 87.36 89.06
CDX90658 Canola extracellular 87.74 88.42
CDY35456 Canola cytosol, mitochondrion 89.66 88.3
Bra012864.1-P Field mustard mitochondrion 87.36 88.03
CDY38172 Canola nucleus 18.39 87.27
Bra017749.1-P Field mustard mitochondrion 89.27 87.27
Bra037242.1-P Field mustard mitochondrion 51.72 85.99
CDY29006 Canola mitochondrion 83.91 84.56
AT3G51190.1 Thale cress mitochondrion 81.99 82.31
CDY25127 Canola cytosol 33.72 80.73
Bra039912.1-P Field mustard cytosol 26.82 77.78
CDY54550 Canola endoplasmic reticulum, extracellular, plasma membrane 38.31 67.57
CDY30333 Canola extracellular 24.52 56.14
CAA33928 Rice plastid 28.74 27.47
CAA33924 Rice cytosol 28.74 27.47
Protein Annotations
MapMan:17.1.2.1.7Gene3D:2.30.30.30Gene3D:2.40.50.140Gene3D:4.10.950.10EntrezGene:4352560ProteinID:ABA99598.1
ProteinID:BAF30081.1ProteinID:BAT17708.1ProteinID:EAZ20909.1GO:GO:0002181GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0015934GO:GO:0019538GO:GO:0022625
InterPro:IPR014722InterPro:IPR014726EMBL:KR905694HAMAP:MF_01320_AInterPro:NA-bd_OB-foldEnsemblPlantsGene:Os12g0567700
EnsemblPlants:Os12t0567700-01PFAM:PF00181PFAM:PF03947PIRSF:PIRSF002158ScanProsite:PS00467PANTHER:PTHR13691
PANTHER:PTHR13691:SF33UniProt:Q2QNF3InterPro:Rbsml_prot_L2_RNA-bd_domInterPro:Rib_L2_dom2InterPro:Ribosomal_L2InterPro:Ribosomal_L2_C
InterPro:Ribosomal_L2_CSInterPro:Ribosomal_L2_arcInterPro:Ribosomal_L2_dom3SMART:SM01382SMART:SM01383SUPFAM:SSF50104
SUPFAM:SSF50249InterPro:Translation_prot_SH3-like_sfUniParc:UPI0000680DD1RefSeq:XP_015619844.1SEG:seg:
Description
RIBOSOMAL PROTEIN L2Similar to 60S ribosomal protein L2 (Fragment). (Os12t0567700-01)
Coordinates
chr12:+:23349996..23351824
Molecular Weight (calculated)
28251.2 Da
IEP (calculated)
11.571
GRAVY (calculated)
-0.498
Length
261 amino acids
Sequence
(BLAST)
001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTDIIH DPGRGAPLAK VTFRHPFRYK HQKELFVAAE GMYTGQFVYC GRRATLSIGN
101: VLPIRSVPEG AVVCNVEHHV GDRGVFARAS GDYAIVISHN PDNGTSRIKL PSGAKKIVPS SCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA T
Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)
001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD
Arabidopsis Description
RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.