Factsheet for VIT_04s0023g03210.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	98.46	98.46
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	97.69	97.69
Os12t0567700-01	Rice	nucleus, plasma membrane	96.15	95.79
KXG23748	Sorghum	mitochondrion	96.15	95.79
EER96269	Sorghum	mitochondrion	96.15	95.79
Zm00001d019473_P001	Maize	plastid	95.77	95.77
GSMUA_Achr11P...	Banana	cytosol	60.77	95.76
Zm00001d041568_P001	Maize	plasma membrane	95.38	95.02
Zm00001d030691_P001	Maize	mitochondrion	95.38	95.02
TraesCS4A01G189200.1	Wheat	mitochondrion	95.0	94.64
TraesCS4B01G128700.1	Wheat	mitochondrion	95.0	94.64
TraesCS4D01G123700.1	Wheat	golgi	95.0	94.64
TraesCS5A01G082800.1	Wheat	mitochondrion	95.0	94.64
TraesCS5B01G088900.1	Wheat	mitochondrion	95.0	94.64
TraesCS5D01G095400.1	Wheat	mitochondrion	95.0	94.64
AT2G18020.1	Thale cress	cytosol, mitochondrion	93.85	94.57
AT4G36130.1	Thale cress	mitochondrion	93.85	94.57
CDY25126	Canola	mitochondrion	85.38	94.47
CDY20905	Canola	mitochondrion	85.38	94.47
GSMUA_Achr11P...	Banana	mitochondrion	94.62	94.25
CDX69201	Canola	cytosol, mitochondrion	93.46	94.19
CDY47054	Canola	extracellular	93.46	94.19
CDX72577	Canola	cytosol, mitochondrion	93.46	94.19
Bra010550.1-P	Field mustard	mitochondrion	93.46	94.19
CDY29217	Canola	cytosol	55.77	94.16
CDY38171	Canola	mitochondrion	85.0	94.04
KRH76671	Soybean	mitochondrion	94.23	93.87
KRH28784	Soybean	mitochondrion	94.23	93.87
GSMUA_Achr5P18740_001	Banana	mitochondrion	94.23	93.87
CDY24796	Canola	mitochondrion	93.08	93.8
Bra039911.1-P	Field mustard	cytosol, mitochondrion	93.08	93.8
KRH08094	Soybean	nucleus	93.46	93.46
KRH69797	Soybean	mitochondrion	93.46	93.46
CDX75555	Canola	cytosol	63.46	93.22
Bra011664.1-P	Field mustard	cytosol, mitochondrion	91.15	91.86
Bra024481.1-P	Field mustard	mitochondrion	90.38	91.8
CDX90658	Canola	extracellular	90.77	91.12
CDY35456	Canola	cytosol, mitochondrion	92.69	90.94
Bra012864.1-P	Field mustard	mitochondrion	90.38	90.73
Bra017749.1-P	Field mustard	mitochondrion	92.31	89.89
VIT_12s0134g00130.t01	Wine grape	cytosol, mitochondrion	28.85	88.24
HORVU5Hr1G021730.2	Barley	cytosol	95.0	87.9
Bra037242.1-P	Field mustard	mitochondrion	53.08	87.9
CDY38172	Canola	nucleus	18.46	87.27
CDY29006	Canola	mitochondrion	86.92	87.26
AT3G51190.1	Thale cress	mitochondrion	84.62	84.62
TraesCS4A01G007200.1	Wheat	mitochondrion	83.85	83.52
HORVU4Hr1G077020.1	Barley	mitochondrion	83.46	83.14
TraesCS4D01G296600.1	Wheat	mitochondrion	83.08	82.76
TraesCS4B01G297800.1	Wheat	mitochondrion	82.69	82.38
CDY25127	Canola	cytosol	34.23	81.65
OQU78327	Sorghum	mitochondrion	80.77	80.77
EES18535	Sorghum	mitochondrion	80.77	80.77
Bra039912.1-P	Field mustard	cytosol	27.31	78.89
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	38.08	66.89
CDY30333	Canola	extracellular	23.85	54.39
VIT_05s0094g01100.t01	Wine grape	mitochondrion	19.23	24.51
VIT_17s0000g06990.t01	Wine grape	nucleus	13.08	20.24
TraesCS7D01G254900.1	Wheat	cytosol	0.38	1.41

Protein Annotations

EntrezGene:100247214	wikigene:100247214	MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10
ProteinID:CCB44373	ProteinID:CCB44373.1	UniProt:F6GWN8	EMBL:FN594959	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
GO:GO:0022625	InterPro:IPR014722	InterPro:IPR014726	EntrezGene:LOC100247214	wikigene:LOC100247214	HAMAP:MF_01320_A
InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691
PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS
InterPro:Ribosomal_L2_arc	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249
TIGR:TC55365	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00015CB555	ArrayExpress:VIT_04s0023g03210	EnsemblPlantsGene:VIT_04s0023g03210	EnsemblPlants:VIT_04s0023g03210.t01
RefSeq:XP_002269409	RefSeq:XP_002269409.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:19762558..19764249

Molecular Weight (calculated)

28118.1 Da

IEP (calculated)

11.506

GRAVY (calculated)

-0.477

Length

260 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRYK HQKELFVAAE GMYTGQFVYC GKKATLIVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVFARAS GDYAIVVSHN PDNGTSRIKL PSGAKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.