CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 5
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78327	Sorghum	mitochondrion	100.0	100.0
HORVU4Hr1G077020.1	Barley	mitochondrion	83.85	83.52
TraesCS4A01G007200.1	Wheat	mitochondrion	83.85	83.52
CDX90658	Canola	extracellular	82.69	83.01
TraesCS4D01G296600.1	Wheat	mitochondrion	83.08	82.76
GSMUA_Achr11P...	Banana	mitochondrion	82.69	82.38
TraesCS4B01G297800.1	Wheat	mitochondrion	82.69	82.38
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	82.31	82.31
Bra012864.1-P	Field mustard	mitochondrion	81.92	82.24
EER96269	Sorghum	mitochondrion	82.31	81.99
GSMUA_Achr5P18740_001	Banana	mitochondrion	82.31	81.99
KXG23748	Sorghum	mitochondrion	82.31	81.99
Solyc12g005330.1.1	Tomato	nucleus	81.54	81.54
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	81.54	81.54
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	81.54	81.54
PGSC0003DMT400056142	Potato	cytosol	81.54	81.54
CDX69201	Canola	cytosol, mitochondrion	80.77	81.4
CDX72577	Canola	cytosol, mitochondrion	80.77	81.4
CDY47054	Canola	extracellular	80.77	81.4
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	81.15	81.15
CDY29006	Canola	mitochondrion	80.77	81.08
Bra039911.1-P	Field mustard	cytosol, mitochondrion	80.38	81.01
VIT_04s0023g03210.t01	Wine grape	mitochondrion	80.77	80.77
Bra010550.1-P	Field mustard	mitochondrion	80.0	80.62
KRH28784	Soybean	mitochondrion	80.77	80.46
KRH69797	Soybean	mitochondrion	80.38	80.38
KRH08094	Soybean	nucleus	80.38	80.38
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	80.38	80.38
Solyc07g063890.2.1	Tomato	extracellular, unclear	80.38	80.38
AT3G51190.1	Thale cress	mitochondrion	80.38	80.38
Bra011664.1-P	Field mustard	cytosol, mitochondrion	79.62	80.23
CDY24796	Canola	mitochondrion	79.62	80.23
KRH76671	Soybean	mitochondrion	80.38	80.08
GSMUA_Achr11P...	Banana	cytosol	50.77	80.0
CDY20905	Canola	mitochondrion	72.31	80.0
CDY25126	Canola	mitochondrion	72.31	80.0
AT2G18020.1	Thale cress	cytosol, mitochondrion	79.23	79.84
AT4G36130.1	Thale cress	mitochondrion	79.23	79.84
CDY38171	Canola	mitochondrion	71.92	79.57
CDX75555	Canola	cytosol	53.46	78.53
Bra017749.1-P	Field mustard	mitochondrion	80.0	77.9
CDY35456	Canola	cytosol, mitochondrion	79.23	77.74
Bra024481.1-P	Field mustard	mitochondrion	76.54	77.73
CDY29217	Canola	cytosol	45.0	75.97
CDY38172	Canola	nucleus	15.38	72.73
Bra037242.1-P	Field mustard	mitochondrion	43.46	71.97
CDY25127	Canola	cytosol	28.46	67.89
Bra039912.1-P	Field mustard	cytosol	21.15	61.11
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	31.92	56.08
CDY30333	Canola	extracellular	21.54	49.12
EER90317	Sorghum	mitochondrion	30.77	18.43
OQU80748	Sorghum	endoplasmic reticulum, extracellular	23.08	16.44

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EntrezGene:8068949	UniProt:C5Z1D6
EnsemblPlants:EES18535	ProteinID:EES18535	ProteinID:EES18535.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625
GO:GO:0042788	InterPro:IPR014722	InterPro:IPR014726	HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold	ProteinID:OQU78327.1
PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF18
InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	EnsemblPlantsGene:SORBI_3009G203800	SUPFAM:SSF50104	SUPFAM:SSF50249
unigene:Sbi.6031	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001A88BF1	RefSeq:XP_002440105.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:55263063..55263959

Molecular Weight (calculated)

28038.0 Da

IEP (calculated)

11.893

GRAVY (calculated)

-0.486

Length

260 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAAGSVFKSH THHRKGPARF RALDVGERSG YLKGVVTDIV HDPGRGAPLA RVTFRHPFRY RQQKELFLAA EGMYTGQLIY CGRRANLSIG
101: NVLPVGTLPE GTVICNVESR VGDRGALARC SGDYAIVISH NTDNGTTRVK LPSGAKKLLQ SNCRAMVGQV AGGGRTEKPL LKAGNAYHKF RVKRNCWPRV
201: RGVAMNPVDH PHGGGNHQHI GHASTVRRDA PPGAKSGHIA ARRTGRRRGQ AAVAAGKSML

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.