Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010550.1-P | Field mustard | mitochondrion | 97.29 | 97.29 |
| CDY24796 | Canola | mitochondrion | 96.9 | 96.9 |
| AT2G18020.1 | Thale cress | cytosol, mitochondrion | 96.51 | 96.51 |
| CDY47054 | Canola | extracellular | 96.51 | 96.51 |
| CDX72577 | Canola | cytosol, mitochondrion | 96.51 | 96.51 |
| CDX69201 | Canola | cytosol, mitochondrion | 96.51 | 96.51 |
| CDX75555 | Canola | cytosol | 65.5 | 95.48 |
| CDY35456 | Canola | cytosol, mitochondrion | 96.51 | 93.96 |
| KRH28784 | Soybean | mitochondrion | 94.96 | 93.87 |
| VIT_04s0023g03210.t01 | Wine grape | mitochondrion | 94.57 | 93.85 |
| Bra011664.1-P | Field mustard | cytosol, mitochondrion | 93.8 | 93.8 |
| KRH69797 | Soybean | mitochondrion | 93.8 | 93.08 |
| KRH08094 | Soybean | nucleus | 93.8 | 93.08 |
| KRH76671 | Soybean | mitochondrion | 93.8 | 92.72 |
| PGSC0003DMT400049608 | Potato | cytosol, mitochondrion | 93.02 | 92.31 |
| PGSC0003DMT400056142 | Potato | cytosol | 93.02 | 92.31 |
| Solyc12g005330.1.1 | Tomato | nucleus | 93.02 | 92.31 |
| Bra017749.1-P | Field mustard | mitochondrion | 95.35 | 92.13 |
| Solyc07g063890.2.1 | Tomato | extracellular, unclear | 92.64 | 91.92 |
| Solyc10g006580.2.1 | Tomato | nucleus, plastid, unclear | 92.25 | 91.54 |
| PGSC0003DMT400064385 | Potato | cytosol, mitochondrion | 92.25 | 91.54 |
| GSMUA_Achr11P... | Banana | cytosol | 58.53 | 91.52 |
| TraesCS4D01G123700.1 | Wheat | golgi | 91.86 | 90.8 |
| TraesCS4B01G128700.1 | Wheat | mitochondrion | 91.86 | 90.8 |
| TraesCS4A01G189200.1 | Wheat | mitochondrion | 91.86 | 90.8 |
| TraesCS5A01G082800.1 | Wheat | mitochondrion | 91.86 | 90.8 |
| TraesCS5B01G088900.1 | Wheat | mitochondrion | 91.86 | 90.8 |
| TraesCS5D01G095400.1 | Wheat | mitochondrion | 91.86 | 90.8 |
| Zm00001d030691_P001 | Maize | mitochondrion | 91.86 | 90.8 |
| Zm00001d041568_P001 | Maize | plasma membrane | 91.86 | 90.8 |
| Os12t0567700-01 | Rice | nucleus, plasma membrane | 91.86 | 90.8 |
| KXG23748 | Sorghum | mitochondrion | 91.86 | 90.8 |
| EER96269 | Sorghum | mitochondrion | 91.86 | 90.8 |
| Zm00001d019473_P001 | Maize | plastid | 91.47 | 90.77 |
| GSMUA_Achr11P... | Banana | mitochondrion | 91.09 | 90.04 |
| GSMUA_Achr5P18740_001 | Banana | mitochondrion | 90.7 | 89.66 |
| AT3G51190.1 | Thale cress | mitochondrion | 87.98 | 87.31 |
| HORVU5Hr1G021730.2 | Barley | cytosol | 91.86 | 84.34 |
| TraesCS4A01G007200.1 | Wheat | mitochondrion | 81.4 | 80.46 |
| HORVU4Hr1G077020.1 | Barley | mitochondrion | 81.4 | 80.46 |
| TraesCS4B01G297800.1 | Wheat | mitochondrion | 81.4 | 80.46 |
| TraesCS4D01G296600.1 | Wheat | mitochondrion | 80.62 | 79.69 |
| OQU78327 | Sorghum | mitochondrion | 79.84 | 79.23 |
| EES18535 | Sorghum | mitochondrion | 79.84 | 79.23 |
| ATCG00830.1 | Thale cress | cytosol, plastid | 29.84 | 28.1 |
| ATCG01310.1 | Thale cress | cytosol, plastid | 29.84 | 28.1 |
| AT2G44065.3 | Thale cress | mitochondrion | 21.32 | 25.7 |
| TraesCS7D01G254900.1 | Wheat | cytosol | 0.39 | 1.41 |
Protein Annotations
| MapMan:17.1.2.1.7 | Gene3D:2.30.30.30 | Gene3D:2.40.50.140 | Gene3D:4.10.950.10 | EntrezGene:829770 | UniProt:A0A178UYN8 |
| ProteinID:AEE86623.1 | EMBL:AF361610 | EMBL:AF367335 | ArrayExpress:AT4G36130 | EnsemblPlantsGene:AT4G36130 | RefSeq:AT4G36130 |
| TAIR:AT4G36130 | RefSeq:AT4G36130-TAIR-G | EnsemblPlants:AT4G36130.1 | TAIR:AT4G36130.1 | EMBL:AY058221 | ProteinID:CAA18119.1 |
| ProteinID:CAA18507.1 | ProteinID:CAB81522.1 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0016020 |
| GO:GO:0019538 | GO:GO:0022625 | GO:GO:0022626 | GO:GO:0030529 | GO:GO:0042788 | InterPro:IPR014722 |
| InterPro:IPR014726 | HAMAP:MF_01320_A | InterPro:NA-bd_OB-fold | RefSeq:NP_195336.1 | ProteinID:OAO98653.1 | PFAM:PF00181 |
| PFAM:PF03947 | PIRSF:PIRSF002158 | PO:PO:0000005 | PO:PO:0000293 | ScanProsite:PS00467 | PANTHER:PTHR13691 |
| PANTHER:PTHR13691:SF33 | UniProt:Q42064 | InterPro:Rbsml_prot_L2_RNA-bd_dom | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L2 | InterPro:Ribosomal_L2_C |
| InterPro:Ribosomal_L2_CS | InterPro:Ribosomal_L2_arc | InterPro:Ribosomal_L2_dom3 | SMART:SM01382 | SMART:SM01383 | SUPFAM:SSF50104 |
| SUPFAM:SSF50249 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI00000ACF38 | EMBL:Z25971 | : | : |
Description
RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
Coordinates
chr4:+:17097405..17098906
Molecular Weight (calculated)
27950.0 Da
IEP (calculated)
11.455
GRAVY (calculated)
-0.454
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.