Factsheet for TraesCS4A01G007200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G296600.1	Wheat	mitochondrion	99.23	99.23
HORVU4Hr1G077020.1	Barley	mitochondrion	97.32	97.32
TraesCS4B01G297800.1	Wheat	mitochondrion	97.32	97.32
CDX90658	Canola	extracellular	84.67	85.33
Bra012864.1-P	Field mustard	mitochondrion	84.29	84.94
GSMUA_Achr11P...	Banana	cytosol	53.26	84.24
Bra039911.1-P	Field mustard	cytosol, mitochondrion	83.14	84.11
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	83.52	83.85
EES18535	Sorghum	mitochondrion	83.52	83.85
OQU78327	Sorghum	mitochondrion	83.52	83.85
VIT_04s0023g03210.t01	Wine grape	mitochondrion	83.52	83.85
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	83.52	83.85
TraesCS4A01G189200.1	Wheat	mitochondrion	83.52	83.52
TraesCS5A01G082800.1	Wheat	mitochondrion	83.52	83.52
GSMUA_Achr11P...	Banana	mitochondrion	83.52	83.52
CDX69201	Canola	cytosol, mitochondrion	82.38	83.33
CDX72577	Canola	cytosol, mitochondrion	82.38	83.33
CDY47054	Canola	extracellular	82.38	83.33
GSMUA_Achr5P18740_001	Banana	mitochondrion	83.14	83.14
CDY25126	Canola	mitochondrion	74.71	82.98
CDY20905	Canola	mitochondrion	74.71	82.98
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	82.38	82.69
PGSC0003DMT400056142	Potato	cytosol	82.38	82.69
Solyc12g005330.1.1	Tomato	nucleus	82.38	82.69
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	82.38	82.69
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	82.38	82.69
Solyc07g063890.2.1	Tomato	extracellular, unclear	82.38	82.69
Bra010550.1-P	Field mustard	mitochondrion	81.61	82.56
AT2G18020.1	Thale cress	cytosol, mitochondrion	81.61	82.56
CDY38171	Canola	mitochondrion	74.33	82.55
CDX75555	Canola	cytosol	55.94	82.49
KRH76671	Soybean	mitochondrion	82.38	82.38
CDY24796	Canola	mitochondrion	81.23	82.17
CDY29006	Canola	mitochondrion	81.23	81.85
Bra011664.1-P	Field mustard	cytosol, mitochondrion	80.84	81.78
KRH28784	Soybean	mitochondrion	81.61	81.61
AT4G36130.1	Thale cress	mitochondrion	80.46	81.4
CDY29217	Canola	cytosol	47.89	81.17
KRH69797	Soybean	mitochondrion	80.84	81.15
KRH08094	Soybean	nucleus	80.84	81.15
Bra024481.1-P	Field mustard	mitochondrion	79.31	80.86
CDY35456	Canola	cytosol, mitochondrion	80.84	79.62
Bra017749.1-P	Field mustard	mitochondrion	81.23	79.4
Bra037242.1-P	Field mustard	mitochondrion	46.74	77.71
AT3G51190.1	Thale cress	mitochondrion	77.39	77.69
CDY38172	Canola	nucleus	15.71	74.55
CDY25127	Canola	cytosol	29.89	71.56
Bra039912.1-P	Field mustard	cytosol	22.61	65.56
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	33.33	58.78
CDY30333	Canola	extracellular	21.84	50.0
TraesCS5A01G274300.1	Wheat	mitochondrion	27.59	40.45
TraesCS5A01G421200.1	Wheat	cytosol, plastid	22.22	40.28
TraesCS3A01G431300.1	Wheat	cytosol, mitochondrion	21.07	35.48
TraesCS2A01G241900.1	Wheat	cytosol, mitochondrion	21.46	33.94
TraesCS6A01G192000.1	Wheat	cytosol	21.46	33.94
TraesCS4A01G153600.1	Wheat	cytosol, mitochondrion	20.69	32.73
TraesCS5A01G436700.1	Wheat	mitochondrion	15.33	27.97
TraesCS7A01G503700.1	Wheat	mitochondrion	28.74	23.51
TraesCS4A01G154700.1	Wheat	plastid	8.05	15.79
TraesCS1A01G011700.1	Wheat	extracellular	3.07	4.73

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726
HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467
PANTHER:PTHR13691	PANTHER:PTHR13691:SF18	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C
InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104
SUPFAM:SSF50249	EnsemblPlantsGene:TraesCS4A01G007200	EnsemblPlants:TraesCS4A01G007200.1	InterPro:Translation_prot_SH3-like_sf	:	:

Description

No Description!

Coordinates

chr4A:+:4636871..4637754

Molecular Weight (calculated)

28071.7 Da

IEP (calculated)

11.741

GRAVY (calculated)

-0.539

Length

261 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRQGPARFR ALDYGERNGY LKGVVTDIVH DPGRGAPLAR LDFRDPVRYK HRKELFVAAE GMYTGQSVYC GRRAVVAIGN
101: VLPLASLPEG AVVCNVEQHV GDRGALARAS GDYAIVISHN SDNGTTRIKL PSGAKKVVQS GCRAMVGQVA GGGRTEKPLL KAGRAYHKFR VKRNSWPRVR
201: GVAMNPVDHP HGGGNHQHIG HASTVRRDAP PGQKVGQIGA RRTGRLRGQA AVNASKDSRA A

Best Arabidopsis Sequence Match ( AT2G18020.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Arabidopsis Description

RPL8AEMB2296 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.