CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75555	Canola	cytosol	96.1	83.62
GSMUA_Achr11P...	Banana	cytosol	84.42	78.79
CDY38172	Canola	nucleus	26.62	74.55
CDY25127	Canola	cytosol	51.95	73.39
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	62.99	65.54
CDY38171	Canola	mitochondrion	100.0	65.53
CDY25126	Canola	mitochondrion	100.0	65.53
CDY20905	Canola	mitochondrion	100.0	65.53
Bra024481.1-P	Field mustard	mitochondrion	100.0	60.16
AT2G18020.1	Thale cress	cytosol, mitochondrion	98.05	58.53
CDX69201	Canola	cytosol, mitochondrion	96.1	57.36
CDY47054	Canola	extracellular	96.1	57.36
CDX72577	Canola	cytosol, mitochondrion	96.1	57.36
CDY24796	Canola	mitochondrion	94.16	56.2
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	94.81	56.15
Solyc07g063890.2.1	Tomato	extracellular, unclear	94.81	56.15
VIT_04s0023g03210.t01	Wine grape	mitochondrion	94.16	55.77
PGSC0003DMT400056142	Potato	cytosol	94.16	55.77
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	94.16	55.77
KRH28784	Soybean	mitochondrion	94.16	55.56
Solyc12g005330.1.1	Tomato	nucleus	93.51	55.38
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	93.51	55.38
KRH08094	Soybean	nucleus	93.51	55.38
KRH69797	Soybean	mitochondrion	93.51	55.38
KRH76671	Soybean	mitochondrion	92.86	54.79
Zm00001d019473_P001	Maize	plastid	92.21	54.62
CDX90658	Canola	extracellular	91.56	54.44
EER96269	Sorghum	mitochondrion	92.21	54.41
KXG23748	Sorghum	mitochondrion	92.21	54.41
CDY35456	Canola	cytosol, mitochondrion	93.51	54.34
TraesCS4A01G189200.1	Wheat	mitochondrion	91.56	54.02
TraesCS5D01G095400.1	Wheat	mitochondrion	91.56	54.02
TraesCS5B01G088900.1	Wheat	mitochondrion	91.56	54.02
Zm00001d030691_P001	Maize	mitochondrion	91.56	54.02
TraesCS5A01G082800.1	Wheat	mitochondrion	91.56	54.02
TraesCS4D01G123700.1	Wheat	golgi	91.56	54.02
TraesCS4B01G128700.1	Wheat	mitochondrion	91.56	54.02
Zm00001d041568_P001	Maize	plasma membrane	91.56	54.02
GSMUA_Achr5P18740_001	Banana	mitochondrion	91.56	54.02
GSMUA_Achr11P...	Banana	mitochondrion	91.56	54.02
Os12t0567700-01	Rice	nucleus, plasma membrane	90.91	53.64
CDY30333	Canola	extracellular	38.31	51.75
CDY29006	Canola	mitochondrion	85.71	50.97
HORVU5Hr1G021730.2	Barley	cytosol	91.56	50.18
TraesCS4A01G007200.1	Wheat	mitochondrion	81.17	47.89
TraesCS4B01G297800.1	Wheat	mitochondrion	81.17	47.89
HORVU4Hr1G077020.1	Barley	mitochondrion	79.87	47.13
TraesCS4D01G296600.1	Wheat	mitochondrion	79.87	47.13
OQU78327	Sorghum	mitochondrion	75.97	45.0
EES18535	Sorghum	mitochondrion	75.97	45.0
CDX99954	Canola	cytosol	24.68	26.76
CDY28606	Canola	cytosol	27.92	22.99
CDX95206	Canola	cytosol	27.92	22.99
CDX91813	Canola	nucleus	27.92	22.99
CDY30453	Canola	mitochondrion	17.53	16.46
CDX79785	Canola	mitochondrion, plastid	22.73	16.36
CDY17889	Canola	mitochondrion, plastid	22.73	16.28
CDX83442	Canola	mitochondrion, plastid	22.73	16.2
CDY21179	Canola	plastid	27.92	16.17
CDX95586	Canola	mitochondrion, plastid	22.73	16.13
CDY23415	Canola	plastid	19.48	11.28
CDX95204	Canola	cytosol, plastid	9.09	7.78
TraesCS7D01G254900.1	Wheat	cytosol	0.65	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:4.10.950.10	GO:A0A078GVP9	UniProt:A0A078GVP9	EnsemblPlants:CDY29217
ProteinID:CDY29217	ProteinID:CDY29217.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00042133001	InterPro:IPR014722
InterPro:IPR014726	PFAM:PF03947	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EEC856

Description

BnaA06g25400DBnaA06g25400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVP9]

Coordinates

chrLK032233:+:300979..301810

Molecular Weight (calculated)

16229.7 Da

IEP (calculated)

10.876

GRAVY (calculated)

-0.331

Length

154 amino acids

Sequence
(BLAST)

001: MYTGQFLYCG KKATLVVGNV LPLRAIPEGA VVCNVEHHVG DRGVLARASG DYAIVISHNP DNDTTRIKLP SGSKKIVPSG CRAMIGQVAG GGRTEKPMLK
101: AGNAYHKYRG NHQHIGHAST VRRDAPPGQK VGLIAARRTG RLRGQAAASA AKAD

Best Arabidopsis Sequence Match ( AT2G18020.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Arabidopsis Description

RPL8AEMB2296 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.