CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38172	Canola	nucleus	45.87	90.91
Bra039912.1-P	Field mustard	cytosol	74.31	90.0
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	71.56	52.7
GSMUA_Achr11P...	Banana	cytosol	78.9	52.12
CDY29217	Canola	cytosol	73.39	51.95
CDX75555	Canola	cytosol	77.98	48.02
CDY30333	Canola	extracellular	43.12	41.23
PGSC0003DMT400056142	Potato	cytosol	83.49	35.0
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	82.57	34.62
Solyc12g005330.1.1	Tomato	nucleus	82.57	34.62
Solyc07g063890.2.1	Tomato	extracellular, unclear	82.57	34.62
TraesCS5B01G088900.1	Wheat	mitochondrion	82.57	34.48
TraesCS5A01G082800.1	Wheat	mitochondrion	82.57	34.48
TraesCS4D01G123700.1	Wheat	golgi	82.57	34.48
TraesCS4B01G128700.1	Wheat	mitochondrion	82.57	34.48
TraesCS4A01G189200.1	Wheat	mitochondrion	82.57	34.48
TraesCS5D01G095400.1	Wheat	mitochondrion	82.57	34.48
CDY38171	Canola	mitochondrion	74.31	34.47
CDY25126	Canola	mitochondrion	74.31	34.47
CDY20905	Canola	mitochondrion	74.31	34.47
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	81.65	34.23
VIT_04s0023g03210.t01	Wine grape	mitochondrion	81.65	34.23
Zm00001d019473_P001	Maize	plastid	81.65	34.23
KRH76671	Soybean	mitochondrion	81.65	34.1
KRH28784	Soybean	mitochondrion	81.65	34.1
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	80.73	33.85
KRH69797	Soybean	mitochondrion	80.73	33.85
KRH08094	Soybean	nucleus	80.73	33.85
Os12t0567700-01	Rice	nucleus, plasma membrane	80.73	33.72
KXG23748	Sorghum	mitochondrion	80.73	33.72
Zm00001d030691_P001	Maize	mitochondrion	80.73	33.72
EER96269	Sorghum	mitochondrion	80.73	33.72
Zm00001d041568_P001	Maize	plasma membrane	80.73	33.72
CDX69201	Canola	cytosol, mitochondrion	78.9	33.33
CDX72577	Canola	cytosol, mitochondrion	78.9	33.33
CDY47054	Canola	extracellular	78.9	33.33
CDY24796	Canola	mitochondrion	78.9	33.33
GSMUA_Achr5P18740_001	Banana	mitochondrion	78.9	32.95
GSMUA_Achr11P...	Banana	mitochondrion	78.9	32.95
CDY35456	Canola	cytosol, mitochondrion	78.9	32.45
HORVU5Hr1G021730.2	Barley	cytosol	82.57	32.03
CDX90658	Canola	extracellular	75.23	31.66
TraesCS4A01G007200.1	Wheat	mitochondrion	71.56	29.89
HORVU4Hr1G077020.1	Barley	mitochondrion	70.64	29.5
TraesCS4B01G297800.1	Wheat	mitochondrion	70.64	29.5
TraesCS4D01G296600.1	Wheat	mitochondrion	70.64	29.5
CDY29006	Canola	mitochondrion	69.72	29.34
EES18535	Sorghum	mitochondrion	67.89	28.46
OQU78327	Sorghum	mitochondrion	67.89	28.46
CDX99954	Canola	cytosol	23.85	18.31
CDY28606	Canola	cytosol	23.85	13.9
CDX91813	Canola	nucleus	23.85	13.9
CDX95206	Canola	cytosol	23.85	13.9
CDX79785	Canola	mitochondrion, plastid	24.77	12.62
CDY17889	Canola	mitochondrion, plastid	24.77	12.56
CDX83442	Canola	mitochondrion, plastid	24.77	12.5
CDX95586	Canola	mitochondrion, plastid	24.77	12.44
CDY30453	Canola	mitochondrion	17.43	11.59
CDY21179	Canola	plastid	23.85	9.77
CDY23415	Canola	plastid	17.43	7.14
TraesCS7D01G254900.1	Wheat	cytosol	0.92	1.41
CDX95204	Canola	cytosol, plastid	0.92	0.56

Protein Annotations

MapMan:35.1	Gene3D:4.10.950.10	GO:A0A078GIX0	UniProt:A0A078GIX0	EnsemblPlants:CDY25127	ProteinID:CDY25127
ProteinID:CDY25127.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00029004001	InterPro:IPR014726	PFAM:PF03947
PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_dom3	SMART:SM01382
SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EB5067	:	:	:

Description

BnaC07g03800DBnaC07g03800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIX0]

Coordinates

chrLK032169:+:10632..10993

Molecular Weight (calculated)

11583.1 Da

IEP (calculated)

10.991

GRAVY (calculated)

-0.477

Length

109 amino acids

Sequence
(BLAST)

001: MGYICCEMIK FPSASKKIVP SGCRAMIGQV AGGGKTEKPI LMAENAYHKY RVKRNSWPKD PNGGGNHQHI GHVSAVRRDA APGQKVGLIA ARRTGRIRGQ
101: AAASAAKAD

Best Arabidopsis Sequence Match ( AT2G18020.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Arabidopsis Description

RPL8AEMB2296 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.