Factsheet for Bra039912.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25127	Canola	cytosol	90.0	74.31
CDY38172	Canola	nucleus	32.22	52.73
GSMUA_Achr11P...	Banana	cytosol	75.56	41.21
Bra037242.1-P	Field mustard	mitochondrion	71.11	40.76
Bra039911.1-P	Field mustard	cytosol, mitochondrion	82.22	28.68
Bra024481.1-P	Field mustard	mitochondrion	81.11	28.52
PGSC0003DMT400056142	Potato	cytosol	81.11	28.08
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	80.0	27.69
Solyc12g005330.1.1	Tomato	nucleus	80.0	27.69
Solyc07g063890.2.1	Tomato	extracellular, unclear	80.0	27.69
TraesCS5D01G095400.1	Wheat	mitochondrion	80.0	27.59
TraesCS5B01G088900.1	Wheat	mitochondrion	80.0	27.59
TraesCS5A01G082800.1	Wheat	mitochondrion	80.0	27.59
TraesCS4D01G123700.1	Wheat	golgi	80.0	27.59
TraesCS4B01G128700.1	Wheat	mitochondrion	80.0	27.59
TraesCS4A01G189200.1	Wheat	mitochondrion	80.0	27.59
VIT_04s0023g03210.t01	Wine grape	mitochondrion	78.89	27.31
Zm00001d019473_P001	Maize	plastid	78.89	27.31
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	78.89	27.31
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	77.78	26.92
KXG23748	Sorghum	mitochondrion	77.78	26.82
Os12t0567700-01	Rice	nucleus, plasma membrane	77.78	26.82
Zm00001d030691_P001	Maize	mitochondrion	77.78	26.82
Zm00001d041568_P001	Maize	plasma membrane	77.78	26.82
KRH76671	Soybean	mitochondrion	77.78	26.82
KRH28784	Soybean	mitochondrion	77.78	26.82
EER96269	Sorghum	mitochondrion	77.78	26.82
KRH69797	Soybean	mitochondrion	76.67	26.54
KRH08094	Soybean	nucleus	76.67	26.54
Bra010550.1-P	Field mustard	mitochondrion	75.56	26.36
GSMUA_Achr5P18740_001	Banana	mitochondrion	74.44	25.67
GSMUA_Achr11P...	Banana	mitochondrion	74.44	25.67
HORVU5Hr1G021730.2	Barley	cytosol	80.0	25.62
Bra017749.1-P	Field mustard	mitochondrion	74.44	25.09
Bra011664.1-P	Field mustard	cytosol, mitochondrion	71.11	24.81
Bra012864.1-P	Field mustard	mitochondrion	68.89	23.94
TraesCS4A01G007200.1	Wheat	mitochondrion	65.56	22.61
TraesCS4B01G297800.1	Wheat	mitochondrion	64.44	22.22
TraesCS4D01G296600.1	Wheat	mitochondrion	64.44	22.22
HORVU4Hr1G077020.1	Barley	mitochondrion	64.44	22.22
EES18535	Sorghum	mitochondrion	61.11	21.15
OQU78327	Sorghum	mitochondrion	61.11	21.15
Bra040982.1-P	Field mustard	cytosol, mitochondrion	23.33	12.73
Bra004801.1-P	Field mustard	mitochondrion	24.44	10.28
Bra036831.1-P	Field mustard	cytosol	20.0	8.41
TraesCS7D01G254900.1	Wheat	cytosol	1.11	1.41

Protein Annotations

MapMan:35.1	Gene3D:4.10.950.10	EnsemblPlantsGene:Bra039912	EnsemblPlants:Bra039912.1	EnsemblPlants:Bra039912.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR014726	UniProt:M4FFN8	PFAM:PF03947	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33
InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0002541188	:	:	:	:	:

Description

AT2G18020 (E=1e-021) EMB2296 | EMB2296 (embryo defective 2296); structural constituent of ribosome

Coordinates

chrA07:-:1701858..1702219

Molecular Weight (calculated)

9664.8 Da

IEP (calculated)

10.571

GRAVY (calculated)

-0.520

Length

90 amino acids

Sequence
(BLAST)

1: MGYICCEMIE LPSASKKIVP SGCRAMIGQV AGGGKTEKPM IKAENTYHKY SVKRNSWPKD RAPGQKVGLI AARRTGRIRG QDAASAAKAD

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.