Factsheet for Bra040982.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G034930.1	Barley	cytosol, mitochondrion	100.0	100.0
HORVU0Hr1G036520.1	Barley	cytosol, mitochondrion	100.0	100.0
HORVU3Hr1G048800.1	Barley	cytosol, mitochondrion	100.0	100.0
HORVU7Hr1G091650.3	Barley	cytosol, mitochondrion	100.0	100.0
TraesCS2D01G264000.1	Wheat	cytosol, mitochondrion	100.0	100.0
TraesCSU01G255700.1	Wheat	cytosol, mitochondrion	98.79	98.79
HORVU2Hr1G070550.1	Barley	cytosol, mitochondrion	98.79	98.79
HORVU5Hr1G004660.1	Barley	cytosol, mitochondrion	98.79	98.79
TraesCS3D01G499500.1	Wheat	cytosol, mitochondrion	98.79	98.79
TraesCS2A01G241900.1	Wheat	cytosol, mitochondrion	98.79	98.79
TraesCS6D01G175200.1	Wheat	cytosol, mitochondrion	98.79	98.79
TraesCSU01G246600.1	Wheat	cytosol, mitochondrion	98.79	98.79
GRMZM5G818111_P01	Maize	cytosol	98.18	98.18
TraesCS7D01G254600.1	Wheat	mitochondrion	80.0	97.78
TraesCS5D01G458000.1	Wheat	cytosol	97.58	97.58
HORVU5Hr1G064920.1	Barley	cytosol, mitochondrion	97.58	97.58
TraesCS6A01G192000.1	Wheat	cytosol	96.97	96.97
TraesCS3B01G469800.1	Wheat	cytosol, mitochondrion	96.97	96.97
TraesCS3A01G431300.1	Wheat	cytosol, mitochondrion	90.91	96.77
TraesCS5A01G436700.1	Wheat	mitochondrion	83.64	96.5
TraesCS3D01G469700.1	Wheat	cytosol, mitochondrion	95.15	95.15
TraesCS1D01G179700.1	Wheat	plastid	86.06	94.67
TraesCS2B01G330900.1	Wheat	cytosol	85.45	90.97
HORVU2Hr1G062100.1	Barley	mitochondrion	52.12	90.53
CDX99954	Canola	cytosol	77.58	90.14
TraesCS4A01G153600.1	Wheat	cytosol, mitochondrion	89.7	89.7
HORVU2Hr1G121550.1	Barley	mitochondrion	46.06	89.41
TraesCS5A01G421200.1	Wheat	cytosol, plastid	77.58	88.89
HORVU0Hr1G034970.1	Barley	cytosol, mitochondrion	84.85	86.42
TraesCS1D01G298800.1	Wheat	plastid	65.45	86.4
HORVU0Hr1G026890.2	Barley	mitochondrion	76.97	83.55
HORVU3Hr1G074880.1	Barley	cytosol	42.42	73.68
KRG93952	Soybean	mitochondrion	47.27	72.22
CDX95206	Canola	cytosol	80.61	71.12
CDY28606	Canola	cytosol	80.61	71.12
CDX91813	Canola	nucleus	79.39	70.05
GRMZM5G827951_P01	Maize	plastid	98.18	65.59
CAA33928	Rice	plastid	90.3	54.58
CAA33924	Rice	cytosol	90.3	54.58
ATCG01310.1	Thale cress	cytosol, plastid	83.64	50.37
ATCG00830.1	Thale cress	cytosol, plastid	83.64	50.37
Solyc10g018610.1.1	Tomato	plastid	50.3	50.0
CDY21179	Canola	plastid	80.61	50.0
VIT_17s0000g06990.t01	Wine grape	nucleus	45.45	44.64
Solyc01g007630.2.1	Tomato	nucleus	81.82	38.35
Bra004801.1-P	Field mustard	mitochondrion	36.97	28.5
Bra037242.1-P	Field mustard	mitochondrion	24.24	25.48
Bra039912.1-P	Field mustard	cytosol	12.73	23.33
Bra010550.1-P	Field mustard	mitochondrion	33.94	21.71
Bra012864.1-P	Field mustard	mitochondrion	33.94	21.62
Bra011664.1-P	Field mustard	cytosol, mitochondrion	33.33	21.32
Bra024481.1-P	Field mustard	mitochondrion	32.73	21.09
Bra017749.1-P	Field mustard	mitochondrion	33.94	20.97
Bra039911.1-P	Field mustard	cytosol, mitochondrion	32.73	20.93
Bra036831.1-P	Field mustard	cytosol	21.21	16.36
TraesCSU01G255800.1	Wheat	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	Gene3D:4.10.950.10	EnsemblPlantsGene:Bra040982	EnsemblPlants:Bra040982.1	EnsemblPlants:Bra040982.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0016740	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726	UniProt:M4FIQ3	PFAM:PF03947
ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF25	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C
InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104	TIGRFAMs:TIGR01171
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000253EB50	SEG:seg	:	:	:

Description

ATCG00830 (E=9e-059) RPL2.1 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex

Coordinates

chrScaffold000352:-:15413..15910

Molecular Weight (calculated)

17988.1 Da

IEP (calculated)

11.886

GRAVY (calculated)

-0.563

Length

165 amino acids

Sequence
(BLAST)

001: MLWKKLVQFG KGFFERKEES TSTDMPLGTA MHNIEITRGR GGQLARAAGA VAKLIAKEGK SATLRLPSGE VRLVSQNCLA TVGQVGNVGV NQKSLGRAGS
101: KCWLGKRPVV RGVVMNPVDH PHGGGEGKAP IGRKKPTTPW GYPALGRRTR KRKKYSDSFI LRRRK

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.