Factsheet for Bra012864.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90658	Canola	extracellular	99.23	99.23
Bra039911.1-P	Field mustard	cytosol, mitochondrion	92.66	93.02
Bra010550.1-P	Field mustard	mitochondrion	91.12	91.47
Bra024481.1-P	Field mustard	mitochondrion	89.58	90.62
VIT_04s0023g03210.t01	Wine grape	mitochondrion	90.73	90.38
Bra011664.1-P	Field mustard	cytosol, mitochondrion	89.96	90.31
KRH28784	Soybean	mitochondrion	89.96	89.27
KRH76671	Soybean	mitochondrion	89.58	88.89
AT3G51190.1	Thale cress	mitochondrion	89.19	88.85
Solyc12g005330.1.1	Tomato	nucleus	89.19	88.85
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	89.19	88.85
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	89.19	88.85
PGSC0003DMT400056142	Potato	cytosol	89.19	88.85
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	89.19	88.85
KRH08094	Soybean	nucleus	88.8	88.46
KRH69797	Soybean	mitochondrion	88.8	88.46
Solyc07g063890.2.1	Tomato	extracellular, unclear	88.8	88.46
GSMUA_Achr11P...	Banana	mitochondrion	88.8	88.12
Bra017749.1-P	Field mustard	mitochondrion	90.73	88.02
GSMUA_Achr5P18740_001	Banana	mitochondrion	88.42	87.74
KXG23748	Sorghum	mitochondrion	88.03	87.36
Os12t0567700-01	Rice	nucleus, plasma membrane	88.03	87.36
EER96269	Sorghum	mitochondrion	88.03	87.36
Zm00001d019473_P001	Maize	plastid	87.64	87.31
GSMUA_Achr11P...	Banana	cytosol	55.6	87.27
TraesCS4D01G123700.1	Wheat	golgi	87.26	86.59
TraesCS5A01G082800.1	Wheat	mitochondrion	87.26	86.59
Zm00001d041568_P001	Maize	plasma membrane	87.26	86.59
TraesCS4B01G128700.1	Wheat	mitochondrion	87.26	86.59
TraesCS5B01G088900.1	Wheat	mitochondrion	87.26	86.59
TraesCS5D01G095400.1	Wheat	mitochondrion	87.26	86.59
Zm00001d030691_P001	Maize	mitochondrion	87.26	86.59
TraesCS4A01G189200.1	Wheat	mitochondrion	87.26	86.59
Bra037242.1-P	Field mustard	mitochondrion	51.74	85.35
TraesCS4A01G007200.1	Wheat	mitochondrion	84.94	84.29
TraesCS4B01G297800.1	Wheat	mitochondrion	84.94	84.29
HORVU4Hr1G077020.1	Barley	mitochondrion	84.94	84.29
TraesCS4D01G296600.1	Wheat	mitochondrion	84.17	83.52
OQU78327	Sorghum	mitochondrion	82.24	81.92
EES18535	Sorghum	mitochondrion	82.24	81.92
HORVU5Hr1G021730.2	Barley	cytosol	87.26	80.43
Bra036831.1-P	Field mustard	cytosol	60.62	73.36
Bra039912.1-P	Field mustard	cytosol	23.94	68.89
Bra040982.1-P	Field mustard	cytosol, mitochondrion	21.62	33.94
Bra004801.1-P	Field mustard	mitochondrion	21.24	25.7
TraesCS7D01G254900.1	Wheat	cytosol	0.39	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EnsemblPlantsGene:Bra012864	EnsemblPlants:Bra012864.1
EnsemblPlants:Bra012864.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0022626	GO:GO:0042788	InterPro:IPR014722
InterPro:IPR014726	UniProt:M4D8Q4	HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947
PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc	InterPro:Ribosomal_L2_dom3	SMART:SM01382
SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00025406D6	SEG:seg

Description

AT4G36130 (E=1e-131) | 60S ribosomal protein L8 (RPL8C)

Coordinates

chrA03:-:21879396..21880340

Molecular Weight (calculated)

28096.1 Da

IEP (calculated)

11.276

GRAVY (calculated)

-0.507

Length

259 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAAGSVFKSH THHRKGPAKF RSLDYGERNG YLKGVVTEII HDPGRGAPLA RVDFRHPFRY KKQKELFVAA EGMYTGQFLY CGKKATLVVG
101: NVLPLRSIPE GAVVCNVELH VGDRGALARA SGDYAIVISH NPDNDTTRIK LPSGAKKIVQ SGCRAMIGQV AGGGRTEKPL LKAGRAYHKY RVKRNCWPIV
201: RGVAMNPVEH PHGGGNHQHI GHASTVRRDA PPGKKVGQIA ARRTGRRRGA AAVESAKAD

Best Arabidopsis Sequence Match ( AT3G51190.1 )
(BLAST)

001: MGRVIRAQRK GAAGSVFKSH THHRKGPAKF RSLDYGERNG YLKGLVTEII HDPGRGAPLA RVAFRHPFRY MKQKELFVAA EGMYTGQYLY CGKKANLMVG
101: NVLPLGSIPE GAVICNVELH VGDRGALARA SGDYAIVIAH NPESNTTRVK LPSGSKKILP SACRAMIGQV AGGGRTEKPL LKAGNAYHKY KAKRNCWPVV
201: RGVAMNPVEH PHGGGNHQHI GHASTVRRDK SAGAKVGQIA ARRTGRRRGA AATLAAKADY

Arabidopsis Description

RPL8B60S ribosomal protein L8-2 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSL7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.