Factsheet for Solyc07g063890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

unclear: 26455813
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	99.62	99.62
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	98.85	98.85
Solyc12g005330.1.1	Tomato	nucleus	97.31	97.31
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	95.0	95.0
CDY29217	Canola	cytosol	56.15	94.81
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	94.23	94.23
GSMUA_Achr11P...	Banana	cytosol	59.62	93.94
KXG23748	Sorghum	mitochondrion	94.23	93.87
EER96269	Sorghum	mitochondrion	94.23	93.87
Zm00001d019473_P001	Maize	plastid	93.85	93.85
CDX75555	Canola	cytosol	63.85	93.79
AT2G18020.1	Thale cress	cytosol, mitochondrion	92.69	93.41
CDY25126	Canola	mitochondrion	84.23	93.19
CDY20905	Canola	mitochondrion	84.23	93.19
Zm00001d041568_P001	Maize	plasma membrane	93.46	93.1
Os12t0567700-01	Rice	nucleus, plasma membrane	93.46	93.1
Zm00001d030691_P001	Maize	mitochondrion	93.46	93.1
CDX72577	Canola	cytosol, mitochondrion	92.31	93.02
CDX69201	Canola	cytosol, mitochondrion	92.31	93.02
CDY47054	Canola	extracellular	92.31	93.02
Bra010550.1-P	Field mustard	mitochondrion	92.31	93.02
CDY38171	Canola	mitochondrion	83.85	92.77
TraesCS5A01G082800.1	Wheat	mitochondrion	93.08	92.72
TraesCS4D01G123700.1	Wheat	golgi	93.08	92.72
TraesCS4B01G128700.1	Wheat	mitochondrion	93.08	92.72
TraesCS4A01G189200.1	Wheat	mitochondrion	93.08	92.72
TraesCS5B01G088900.1	Wheat	mitochondrion	93.08	92.72
TraesCS5D01G095400.1	Wheat	mitochondrion	93.08	92.72
CDY24796	Canola	mitochondrion	91.92	92.64
Bra039911.1-P	Field mustard	cytosol, mitochondrion	91.92	92.64
AT4G36130.1	Thale cress	mitochondrion	91.92	92.64
GSMUA_Achr5P18740_001	Banana	mitochondrion	92.69	92.34
KRH08094	Soybean	nucleus	92.31	92.31
KRH69797	Soybean	mitochondrion	92.31	92.31
KRH28784	Soybean	mitochondrion	92.31	91.95
GSMUA_Achr11P...	Banana	mitochondrion	92.31	91.95
KRH76671	Soybean	mitochondrion	91.54	91.19
Bra011664.1-P	Field mustard	cytosol, mitochondrion	90.0	90.7
Bra024481.1-P	Field mustard	mitochondrion	89.23	90.62
CDY35456	Canola	cytosol, mitochondrion	91.54	89.81
CDX90658	Canola	extracellular	88.85	89.19
Bra012864.1-P	Field mustard	mitochondrion	88.46	88.8
Bra017749.1-P	Field mustard	mitochondrion	91.15	88.76
Bra037242.1-P	Field mustard	mitochondrion	53.46	88.53
CDY38172	Canola	nucleus	18.46	87.27
HORVU5Hr1G021730.2	Barley	cytosol	93.08	86.12
CDY29006	Canola	mitochondrion	85.0	85.33
AT3G51190.1	Thale cress	mitochondrion	83.85	83.85
CDY25127	Canola	cytosol	34.62	82.57
TraesCS4A01G007200.1	Wheat	mitochondrion	82.69	82.38
TraesCS4D01G296600.1	Wheat	mitochondrion	81.92	81.61
HORVU4Hr1G077020.1	Barley	mitochondrion	81.92	81.61
TraesCS4B01G297800.1	Wheat	mitochondrion	81.15	80.84
EES18535	Sorghum	mitochondrion	80.38	80.38
OQU78327	Sorghum	mitochondrion	80.38	80.38
Bra039912.1-P	Field mustard	cytosol	27.69	80.0
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	38.46	67.57
CDY30333	Canola	extracellular	23.85	54.39
Solyc08g075410.2.1	Tomato	mitochondrion	20.77	26.73
Solyc10g018610.1.1	Tomato	plastid	14.62	22.89
Solyc01g007630.2.1	Tomato	nucleus	28.46	21.02
TraesCS7D01G254900.1	Wheat	cytosol	0.38	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
InterPro:IPR014722	InterPro:IPR014726	UniProt:K4CH72	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947
PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383
SUPFAM:SSF50104	SUPFAM:SSF50249	EnsemblPlantsGene:Solyc07g063890.2	EnsemblPlants:Solyc07g063890.2.1	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000276C219
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:66240286..66242326

Molecular Weight (calculated)

28231.4 Da

IEP (calculated)

11.437

GRAVY (calculated)

-0.494

Length

260 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR TLDFGERNGY LKGVITEVIH DPGRGAPLAR ITFRHPFRYK HQKELFVAAE GMYTGQFVYC GKKATLMVGN
101: VLPLRSIPEG AVVCNVEHKV GDRGVFARCS GDYAIVISHN PDNGTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.