Factsheet for TraesCS4D01G123700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G095400.1	Wheat	mitochondrion	100.0	100.0
TraesCS4B01G128700.1	Wheat	mitochondrion	100.0	100.0
TraesCS4A01G189200.1	Wheat	mitochondrion	100.0	100.0
Zm00001d019473_P001	Maize	plastid	97.32	97.69
KXG23748	Sorghum	mitochondrion	97.32	97.32
Zm00001d041568_P001	Maize	plasma membrane	97.32	97.32
Zm00001d030691_P001	Maize	mitochondrion	97.32	97.32
Os12t0567700-01	Rice	nucleus, plasma membrane	97.32	97.32
EER96269	Sorghum	mitochondrion	97.32	97.32
VIT_04s0023g03210.t01	Wine grape	mitochondrion	94.64	95.0
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	93.49	93.85
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	93.49	93.85
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	93.49	93.85
KRH76671	Soybean	mitochondrion	93.49	93.49
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	93.1	93.46
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	93.1	93.46
GSMUA_Achr11P...	Banana	cytosol	59.0	93.33
KRH08094	Soybean	nucleus	92.72	93.08
Solyc07g063890.2.1	Tomato	extracellular, unclear	92.72	93.08
KRH69797	Soybean	mitochondrion	92.72	93.08
HORVU5Hr1G021730.2	Barley	cytosol	100.0	92.88
KRH28784	Soybean	mitochondrion	92.72	92.72
PGSC0003DMT400056142	Potato	cytosol	92.34	92.69
Solyc12g005330.1.1	Tomato	nucleus	91.95	92.31
Bra039911.1-P	Field mustard	cytosol, mitochondrion	91.19	92.25
AT2G18020.1	Thale cress	cytosol, mitochondrion	91.19	92.25
AT4G36130.1	Thale cress	mitochondrion	90.8	91.86
GSMUA_Achr11P...	Banana	mitochondrion	91.57	91.57
CDY29217	Canola	cytosol	54.02	91.56
CDY25126	Canola	mitochondrion	82.38	91.49
CDY20905	Canola	mitochondrion	82.38	91.49
GSMUA_Achr5P18740_001	Banana	mitochondrion	91.19	91.19
CDY38171	Canola	mitochondrion	81.99	91.06
Bra010550.1-P	Field mustard	mitochondrion	89.66	90.7
CDY47054	Canola	extracellular	89.66	90.7
CDX72577	Canola	cytosol, mitochondrion	89.66	90.7
CDX69201	Canola	cytosol, mitochondrion	89.66	90.7
CDY24796	Canola	mitochondrion	89.27	90.31
CDX75555	Canola	cytosol	60.92	89.83
Bra024481.1-P	Field mustard	mitochondrion	87.74	89.45
CDY38172	Canola	nucleus	18.77	89.09
Bra011664.1-P	Field mustard	cytosol, mitochondrion	87.36	88.37
CDX90658	Canola	extracellular	86.97	87.64
CDY35456	Canola	cytosol, mitochondrion	88.89	87.55
Bra012864.1-P	Field mustard	mitochondrion	86.59	87.26
Bra017749.1-P	Field mustard	mitochondrion	88.51	86.52
Bra037242.1-P	Field mustard	mitochondrion	51.34	85.35
CDY29006	Canola	mitochondrion	83.14	83.78
TraesCS4D01G296600.1	Wheat	mitochondrion	82.76	82.76
CDY25127	Canola	cytosol	34.48	82.57
AT3G51190.1	Thale cress	mitochondrion	81.99	82.31
Bra039912.1-P	Field mustard	cytosol	27.59	80.0
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	37.93	66.89
CDY30333	Canola	extracellular	24.14	55.26
TraesCS1D01G179700.1	Wheat	plastid	21.84	38.0
TraesCS1D01G298800.1	Wheat	plastid	17.62	36.8
TraesCS4D01G043800.1	Wheat	plastid	21.07	35.71
TraesCS7D01G254600.1	Wheat	mitochondrion	18.39	35.56
TraesCS5D01G008500.1	Wheat	cytosol, mitochondrion	18.77	32.89
TraesCS2D01G264000.1	Wheat	cytosol, mitochondrion	20.31	32.12
TraesCS5D01G458000.1	Wheat	cytosol	19.92	31.52
TraesCS6D01G175200.1	Wheat	cytosol, mitochondrion	19.92	31.52
TraesCS3D01G499500.1	Wheat	cytosol, mitochondrion	19.92	31.52
TraesCS3D01G469700.1	Wheat	cytosol, mitochondrion	18.77	29.7
TraesCS1D01G010400.1	Wheat	mitochondrion	27.59	22.57
TraesCS4D01G362200.1	Wheat	cytosol	4.6	17.14
TraesCS6D01G080000.1	Wheat	cytosol	0.38	1.41
TraesCS5D01G345600.1	Wheat	cytosol	0.38	1.41
TraesCS7D01G254900.1	Wheat	cytosol	0.38	1.41
TraesCS5D01G219800.1	Wheat	cytosol	0.38	1.41
TraesCS5D01G008400.1	Wheat	cytosol	0.38	1.41
TraesCS4D01G043700.1	Wheat	cytosol	0.38	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726
HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467
PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C
InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104
SUPFAM:SSF50249	EnsemblPlantsGene:TraesCS4D01G123700	EnsemblPlants:TraesCS4D01G123700.1	InterPro:Translation_prot_SH3-like_sf	SEG:seg	:

Description

No Description!

Coordinates

chr4D:-:108051485..108053001

Molecular Weight (calculated)

28193.0 Da

IEP (calculated)

11.657

GRAVY (calculated)

-0.523

Length

261 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTDVIH DPGRGAPLAK VTFRHPFRYK HQKELFVAAE GMYTGQFVYC GRRATLSVGN
101: VLPLRSVPEG GVICNVEHHV GDRGVFARAS GDYAIVISHN PDNGTSRIKL PSGAKKIVPS SCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKADKA T

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.