Factsheet for TraesCS1D01G010400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G395800.1	Wheat	cytosol	44.2	99.3
TraesCS7A01G503700.1	Wheat	mitochondrion	98.43	98.43
TraesCS1B01G414400.1	Wheat	mitochondrion	96.55	95.95
TraesCS1B01G038000.1	Wheat	mitochondrion	96.55	95.95
HORVU1Hr1G002310.1	Barley	mitochondrion, plastid	97.81	86.67
HORVU3Hr1G001530.1	Barley	plastid	97.18	86.35
KRH38753	Soybean	mitochondrion	33.86	55.38
KRH09254	Soybean	nucleus	33.54	54.87
VIT_05s0094g01100.t01	Wine grape	mitochondrion	34.48	53.92
Solyc08g075410.2.1	Tomato	mitochondrion	32.92	51.98
GSMUA_AchrUn_...	Banana	mitochondrion	63.95	46.58
AT2G44065.3	Thale cress	mitochondrion	30.72	45.79
TraesCS1D01G179700.1	Wheat	plastid	21.32	45.33
CDX83442	Canola	mitochondrion, plastid	30.41	44.91
CDX95586	Canola	mitochondrion, plastid	30.41	44.7
CDY17889	Canola	mitochondrion, plastid	30.09	44.65
CDX79785	Canola	mitochondrion, plastid	29.78	44.39
Bra004801.1-P	Field mustard	mitochondrion	29.47	43.93
TraesCS7D01G254600.1	Wheat	mitochondrion	18.5	43.7
TraesCS1D01G298800.1	Wheat	plastid	16.93	43.2
EER90317	Sorghum	mitochondrion	58.62	43.09
TraesCS4D01G043800.1	Wheat	plastid	20.69	42.86
Zm00001d050496_P001	Maize	mitochondrion	58.62	41.74
TraesCS5D01G008500.1	Wheat	cytosol, mitochondrion	19.12	40.94
TraesCS5D01G458000.1	Wheat	cytosol	20.69	40.0
TraesCS6D01G175200.1	Wheat	cytosol, mitochondrion	20.69	40.0
TraesCS2D01G264000.1	Wheat	cytosol, mitochondrion	20.69	40.0
TraesCS3D01G499500.1	Wheat	cytosol, mitochondrion	20.38	39.39
OQU80748	Sorghum	endoplasmic reticulum, extracellular	42.95	37.53
TraesCS3D01G469700.1	Wheat	cytosol, mitochondrion	18.81	36.36
CDY30453	Canola	mitochondrion	18.18	35.37
TraesCS4D01G296600.1	Wheat	mitochondrion	23.51	28.74
TraesCS4D01G123700.1	Wheat	golgi	22.57	27.59
TraesCS5D01G095400.1	Wheat	mitochondrion	22.57	27.59
CDY23415	Canola	plastid	21.32	25.56
TraesCS4D01G362200.1	Wheat	cytosol	5.33	24.29
TraesCS5D01G219800.1	Wheat	cytosol	0.0	0.0
TraesCS7D01G254900.1	Wheat	cytosol	0.0	0.0
TraesCS6D01G080000.1	Wheat	cytosol	0.0	0.0
TraesCS5D01G345600.1	Wheat	cytosol	0.0	0.0
TraesCS5D01G008400.1	Wheat	cytosol	0.0	0.0
TraesCS4D01G043700.1	Wheat	cytosol	0.0	0.0

Protein Annotations

MapMan:17.7.1.1.2	MapMan:17.7.1.1.3	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740
GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947
PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF34	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382
SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR01171	EnsemblPlantsGene:TraesCS1D01G010400	EnsemblPlants:TraesCS1D01G010400.1
InterPro:Translation_prot_SH3-like_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:5448362..5449321

Molecular Weight (calculated)

34576.7 Da

IEP (calculated)

11.121

GRAVY (calculated)

-0.571

Length

319 amino acids

Sequence
(BLAST)

001: MQKFKTLAKA LTGKTVTAGR NSSGRITSFH RGGGSKRSLR DIDLKRNTCS VGIVERIEYD PNRSSRIALL RWIEGVPQKD PAYKAERAPV NYIIASHQME
101: PGSMVVNSDS SKPSTTGSLM RPAHNANSIL RFQELFRKAS QEGEEGTDDQ AKDAAVPAAA PLMPADLLDL NSKVGNCMPL SDIRMGTWVH SIELRHGQGA
201: KLVRAAGAYA KVVKESATQC LVRLPSGVEK LIDSRCRATI GIVSNPTHGA RKLRKAGHSR WLGRRPVVRG VAMNPVDHPH GGGEGRTKGG RPSVSPWGKP
301: TKAGYRTVPK KPKAQLSRD

Best Arabidopsis Sequence Match ( AT2G44065.3 )
(BLAST)

001: MSGLVALCRA RASASSSLFN SVIRPAFRNF STGFADTQNK SLVAQMKEEM LHMDINSMIG SSMPLGMMRI GTIIHNIEMN PGQGAKMVRA AGTNAKILKE
101: PAKGKCLIKL PSGDTKWINA KCRATIGTVS NPSHGTKKLY KAGQSRWLGI RPKVRGVAMN PCDHPHGGGE GKSKSSGSRG RTSVSPWGKP CKGGYKSASV
201: KKKKKRLAEA AAKM

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8VZU4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.