Factsheet for VIT_05s0094g01100.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09254	Soybean	nucleus	71.08	74.36
KRH38753	Soybean	mitochondrion	70.59	73.85
Solyc08g075410.2.1	Tomato	mitochondrion	70.59	71.29
TraesCS1B01G395800.1	Wheat	cytosol	47.55	68.31
CDX95586	Canola	mitochondrion, plastid	61.76	58.06
CDY17889	Canola	mitochondrion, plastid	60.78	57.67
CDX79785	Canola	mitochondrion, plastid	60.29	57.48
CDX83442	Canola	mitochondrion, plastid	60.78	57.41
AT2G44065.3	Thale cress	mitochondrion	59.8	57.01
Bra004801.1-P	Field mustard	mitochondrion	59.31	56.54
CDY30453	Canola	mitochondrion	36.27	45.12
TraesCS7A01G503700.1	Wheat	mitochondrion	53.92	34.48
TraesCS1D01G010400.1	Wheat	mitochondrion	53.92	34.48
TraesCS1B01G038000.1	Wheat	mitochondrion	53.43	33.96
TraesCS1B01G414400.1	Wheat	mitochondrion	52.94	33.64
HORVU1Hr1G002310.1	Barley	mitochondrion, plastid	54.41	30.83
HORVU3Hr1G001530.1	Barley	plastid	53.92	30.64
CDY23415	Canola	plastid	36.76	28.2
OQU80748	Sorghum	endoplasmic reticulum, extracellular	49.02	27.4
VIT_17s0000g06990.t01	Wine grape	nucleus	21.08	25.6
EER90317	Sorghum	mitochondrion	53.92	25.35
Zm00001d050496_P001	Maize	mitochondrion	55.39	25.22
GSMUA_AchrUn_...	Banana	mitochondrion	52.94	24.66
VIT_04s0023g03210.t01	Wine grape	mitochondrion	24.51	19.23
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	24.51	19.23
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	24.51	19.23
VIT_12s0134g00130.t01	Wine grape	cytosol, mitochondrion	0.0	0.0

Protein Annotations

EntrezGene:100266379	wikigene:100266379	MapMan:17.7.1.1.3	Gene3D:2.30.30.30	Gene3D:4.10.950.10	ProteinID:CBI24728
ProteinID:CBI24728.3	UniProt:D7T2J7	EMBL:FN595507	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005762	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740
GO:GO:0019538	GO:GO:0032543	InterPro:IPR014722	InterPro:IPR014726	EntrezGene:LOC100266379	wikigene:LOC100266379
PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF34	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104
TIGRFAMs:TIGR01171	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00015CB850	ArrayExpress:VIT_05s0094g01100	EnsemblPlantsGene:VIT_05s0094g01100	EnsemblPlants:VIT_05s0094g01100.t01
unigene:Vvi.2426	RefSeq:XP_002279271	RefSeq:XP_002279271.1	RefSeq:XP_010650732.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:24441969..24443617

Molecular Weight (calculated)

21920.9 Da

IEP (calculated)

12.104

GRAVY (calculated)

-0.450

Length

204 amino acids

Sequence
(BLAST)

001: MALVRARAAS STLLKRLLFP SVANPSHRNL SSVAKDSPHD AFRESMMNQM FSLDINSQIG SCMPLAAMRI GTIIHNIEIN PGQGGKLVRA AGTSAKLLKE
101: PTSRYVLVRM PSGVQKLIDT RCRATIGTVS NPGHGAKKLR KAGQSRWLGR RPVVRGVAMN PVDHPHGGGE GRSKSGGSHG RGSLTPWGKP TKCGYKTGPL
201: KRRK

Best Arabidopsis Sequence Match ( AT2G44065.3 )
(BLAST)

001: MSGLVALCRA RASASSSLFN SVIRPAFRNF STGFADTQNK SLVAQMKEEM LHMDINSMIG SSMPLGMMRI GTIIHNIEMN PGQGAKMVRA AGTNAKILKE
101: PAKGKCLIKL PSGDTKWINA KCRATIGTVS NPSHGTKKLY KAGQSRWLGI RPKVRGVAMN PCDHPHGGGE GKSKSSGSRG RTSVSPWGKP CKGGYKSASV
201: KKKKKRLAEA AAKM

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8VZU4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.