Factsheet for GSMUA_AchrUn_randomP10060_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G395800.1	Wheat	cytosol	24.66	76.06
TraesCS7A01G503700.1	Wheat	mitochondrion	46.58	63.95
TraesCS1D01G010400.1	Wheat	mitochondrion	46.58	63.95
TraesCS1B01G038000.1	Wheat	mitochondrion	46.12	62.93
TraesCS1B01G414400.1	Wheat	mitochondrion	45.89	62.62
HORVU3Hr1G001530.1	Barley	plastid	47.03	57.38
HORVU1Hr1G002310.1	Barley	mitochondrion, plastid	46.8	56.94
EER90317	Sorghum	mitochondrion	54.79	55.3
Zm00001d050496_P001	Maize	mitochondrion	56.16	54.91
KRH09254	Soybean	nucleus	24.2	54.36
KRH38753	Soybean	mitochondrion	24.2	54.36
VIT_05s0094g01100.t01	Wine grape	mitochondrion	24.66	52.94
OQU80748	Sorghum	endoplasmic reticulum, extracellular	42.69	51.23
Solyc08g075410.2.1	Tomato	mitochondrion	23.06	50.0
AT2G44065.3	Thale cress	mitochondrion	23.06	47.2
CDX83442	Canola	mitochondrion, plastid	22.83	46.3
CDX95586	Canola	mitochondrion, plastid	22.83	46.08
CDY17889	Canola	mitochondrion, plastid	22.6	46.05
CDX79785	Canola	mitochondrion, plastid	22.37	45.79
Bra004801.1-P	Field mustard	mitochondrion	22.15	45.33
CDY30453	Canola	mitochondrion	13.24	35.37
GSMUA_Achr11P...	Banana	cytosol	12.33	32.73
GSMUA_Achr11P...	Banana	mitochondrion	17.12	28.74
GSMUA_Achr5P18740_001	Banana	mitochondrion	16.89	28.35
CDY23415	Canola	plastid	15.53	25.56

Protein Annotations

MapMan:17.7.1.1.2	MapMan:17.7.1.1.3	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0015934	GO:GO:0016740	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSMUA_AchrUn_randomG10060_001
EnsemblPlants:GSMUA_AchrUn_randomP10060_001	EnsemblPlants:GSMUA_AchrUn_randomT10060_001	InterPro:IPR014722	InterPro:IPR014726	UniProt:M0U7W6	InterPro:NA-bd_OB-fold
PFAM:PF00181	PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF34	InterPro:Rbsml_prot_L2_RNA-bd_dom
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_dom3	SMART:SM01382
SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000296C4AF	SEG:seg

Description

60S ribosomal protein L2, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG10060_001]

Coordinates

chrchrUn_random:+:48378395..48381285

Molecular Weight (calculated)

48432.9 Da

IEP (calculated)

11.712

GRAVY (calculated)

-0.458

Length

438 amino acids

Sequence
(BLAST)

001: MRQSLKGGAL RHFTLSLRKS AGRNSSGRIT SFHRGGGSKR LQRKIDLKRS TESIGIVERI EYDPNRSSRI ALVRWGVKLR RQRKCNTIEE FAPPRKILES
101: TIATIFCLYS QASAGSKQTS AKDVFFSSLS SPFAKGDTTS LCFDSSLSIP RIAVAGAKRT FFAPRMRDQV LGINPFSLCE IRKWRTDCVI WAHRIKRKGA
201: LSWQSSLQAK PIGEGMKDRA CKVDRAPVRS QASFLRRVRP DGKKIEVNTY ILASHQLEAG KTVMNCDWSK PSKSFLRPAQ NVHTYLRRKG DLNSQVGNCI
301: PLANLRMGTW VHDIECNPGQ GAKLVRAAGT YAKIIKEPAS LCLVQLPSGV SKQIDSRCRA TIGIVSNPNH GARKLRKAGQ SRWLGRRPIV RGVAMNPVDH
401: PHGGGEGRTK GGRPSVSPWG KPTKAGFRAV LGVGQVRM

Best Arabidopsis Sequence Match ( ATMG00560.1 )
(BLAST)

001: MRPGRARALR QFTLSTGKSA GRNSSGRITV FHRGGGSKRL LRRIDLKRST SSMGIVESIE YDPNRSSQIA PVRWIKGGCQ KKMNTIEKFA PPRKILEPTT
101: NTISGLFSFS FLPGKVDKRK VACFSPGLMA AYVVVGLPTG MPPLSSSKSA FASKGAGSTK TLVKDVFFSA FSSPKAKRET ASLAFASSFG FPRIAVAGAK
201: PAFFAPRMRQ KVRGKSTFSL CEVQKGRTHS ILWAHRIKGK AGLSWQSFRR QDTLGLVGAA GHKKSKPKTD QGNLPAKPIG ERAKQLKALR GLRAKDGACK
301: VDRAPVTYII ASHQLEAGKM VMNCDWSKPS TSSFLQSAQN DHPKPLFTV

Arabidopsis Description

RPL2Rpl2 [Source:UniProtKB/TrEMBL;Acc:G1C2X5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.