Factsheet for TraesCS4D01G043800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G179700.1	Wheat	plastid	88.96	91.33
TraesCS7D01G254600.1	Wheat	mitochondrion	77.27	88.15
TraesCS1D01G298800.1	Wheat	plastid	68.83	84.8
TraesCS2D01G264000.1	Wheat	cytosol, mitochondrion	87.66	81.82
TraesCS6D01G175200.1	Wheat	cytosol, mitochondrion	86.36	80.61
TraesCS3D01G499500.1	Wheat	cytosol, mitochondrion	86.36	80.61
TraesCS5D01G458000.1	Wheat	cytosol	85.71	80.0
TraesCS3D01G469700.1	Wheat	cytosol, mitochondrion	82.47	76.97
TraesCS5D01G008500.1	Wheat	cytosol, mitochondrion	72.73	75.17
TraesCS4D01G362200.1	Wheat	cytosol	10.39	22.86
TraesCS4D01G296600.1	Wheat	mitochondrion	38.31	22.61
TraesCS5D01G095400.1	Wheat	mitochondrion	35.71	21.07
TraesCS4D01G123700.1	Wheat	golgi	35.71	21.07
TraesCS1D01G010400.1	Wheat	mitochondrion	42.86	20.69
Bra036831.1-P	Field mustard	cytosol	24.68	17.76
TraesCS6D01G080000.1	Wheat	cytosol	0.0	0.0
TraesCS7D01G254900.1	Wheat	cytosol	0.0	0.0
TraesCS5D01G345600.1	Wheat	cytosol	0.0	0.0
VIT_12s0134g00130.t01	Wine grape	cytosol, mitochondrion	0.0	0.0
TraesCS5D01G219800.1	Wheat	cytosol	0.0	0.0
TraesCS5D01G008400.1	Wheat	cytosol	0.0	0.0
TraesCS4D01G043700.1	Wheat	cytosol	0.0	0.0
HORVU0Hr1G034600.1	Barley	cytosol	0.0	0.0
HORVU0Hr1G034040.1	Barley	cytosol	0.0	0.0
HORVU0Hr1G033410.1	Barley	cytosol	0.0	0.0
HORVU0Hr1G028650.1	Barley	cytosol	0.0	0.0
HORVU0Hr1G026900.1	Barley	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	Gene3D:4.10.950.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740	GO:GO:0019538	InterPro:IPR014722
InterPro:IPR014726	PFAM:PF03947	PANTHER:PTHR13691	PANTHER:PTHR13691:SF25	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104	TIGRFAMs:TIGR01171
EnsemblPlantsGene:TraesCS4D01G043800	EnsemblPlants:TraesCS4D01G043800.1	InterPro:Translation_prot_SH3-like_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:19927450..19928834

Molecular Weight (calculated)

16067.9 Da

IEP (calculated)

12.221

GRAVY (calculated)

-0.225

Length

154 amino acids

Sequence
(BLAST)

001: MGNALPLKST STDMPLGTAM HNIEITRGRG GQLARAAGAV AKLIAKEGKS ATLRLPSGEV RLVSQNCLAT VGQVGNVGVN QKSLGRAGSK CWLGKRPVVR
101: GVVMNPVGNP HGGGEGKAPI GRKKPTTPWG YPALGRRTRK RKKNIAIVLS FVAL

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.