Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G062100.1 | Barley | mitochondrion | 64.8 | 85.26 |
| TraesCS5D01G008500.1 | Wheat | cytosol, mitochondrion | 92.8 | 77.85 |
| TraesCS1D01G179700.1 | Wheat | plastid | 86.4 | 72.0 |
| TraesCS7D01G254600.1 | Wheat | mitochondrion | 77.6 | 71.85 |
| CDX99954 | Canola | cytosol | 80.0 | 70.42 |
| TraesCS4D01G043800.1 | Wheat | plastid | 84.8 | 68.83 |
| HORVU0Hr1G034970.1 | Barley | cytosol, mitochondrion | 86.4 | 66.67 |
| Bra040982.1-P | Field mustard | cytosol, mitochondrion | 86.4 | 65.45 |
| TraesCS2D01G264000.1 | Wheat | cytosol, mitochondrion | 86.4 | 65.45 |
| TraesCS3D01G499500.1 | Wheat | cytosol, mitochondrion | 85.6 | 64.85 |
| GRMZM5G818111_P01 | Maize | cytosol | 84.8 | 64.24 |
| TraesCS6D01G175200.1 | Wheat | cytosol, mitochondrion | 84.8 | 64.24 |
| TraesCS5D01G458000.1 | Wheat | cytosol | 84.0 | 63.64 |
| KRG93952 | Soybean | mitochondrion | 53.6 | 62.04 |
| TraesCS3D01G469700.1 | Wheat | cytosol, mitochondrion | 81.6 | 61.82 |
| CDX91813 | Canola | nucleus | 80.0 | 53.48 |
| CDY28606 | Canola | cytosol | 80.0 | 53.48 |
| CDX95206 | Canola | cytosol | 80.0 | 53.48 |
| GRMZM5G827951_P01 | Maize | plastid | 84.8 | 42.91 |
| CAA33928 | Rice | plastid | 85.6 | 39.19 |
| CAA33924 | Rice | cytosol | 85.6 | 39.19 |
| CDY21179 | Canola | plastid | 80.0 | 37.59 |
| Solyc10g018610.1.1 | Tomato | plastid | 49.6 | 37.35 |
| ATCG01310.1 | Thale cress | cytosol, plastid | 80.8 | 36.86 |
| ATCG00830.1 | Thale cress | cytosol, plastid | 80.8 | 36.86 |
| VIT_17s0000g06990.t01 | Wine grape | nucleus | 43.2 | 32.14 |
| Solyc01g007630.2.1 | Tomato | nucleus | 79.2 | 28.12 |
| TraesCS4D01G296600.1 | Wheat | mitochondrion | 40.0 | 19.16 |
| TraesCS4D01G362200.1 | Wheat | cytosol | 10.4 | 18.57 |
| TraesCS4D01G123700.1 | Wheat | golgi | 36.8 | 17.62 |
| TraesCS5D01G095400.1 | Wheat | mitochondrion | 36.8 | 17.62 |
| TraesCS1D01G010400.1 | Wheat | mitochondrion | 43.2 | 16.93 |
| TraesCS5D01G008400.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS4D01G043700.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS5D01G219800.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS5D01G345600.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS6D01G080000.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS7D01G254900.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.30.30.30 | MapMan:35.1 | Gene3D:4.10.950.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR014722 |
| InterPro:IPR014726 | PFAM:PF03947 | ScanProsite:PS00467 | PANTHER:PTHR13691 | PANTHER:PTHR13691:SF25 | InterPro:Rib_L2_dom2 |
| InterPro:Ribosomal_L2 | InterPro:Ribosomal_L2_C | InterPro:Ribosomal_L2_CS | InterPro:Ribosomal_L2_dom3 | SMART:SM01382 | SUPFAM:SSF50104 |
| EnsemblPlantsGene:TraesCS1D01G298800 | EnsemblPlants:TraesCS1D01G298800.1 | InterPro:Translation_prot_SH3-like_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1D:+:397089360..397089737
Molecular Weight (calculated)
13155.2 Da
IEP (calculated)
11.674
GRAVY (calculated)
-0.331
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLGTAMHNI EITRGRGGQL ARAAGVVAKL IAKEGKSTTL RLPSREVRLV SQNCLATVGQ VGNVGVNQKS LGRAGSKCWL GKRPVVRGVV MNPVDHPDGS
101: GEGKAPIGRK KTHNPLGLSC AWKKN
101: GEGKAPIGRK KTHNPLGLSC AWKKN
001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK
Arabidopsis Description
rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.