CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA33924	Rice	cytosol	100.0	100.0
TraesCS1D01G179700.1	Wheat	plastid	53.85	98.0
CDX99954	Canola	cytosol	47.25	90.85
HORVU2Hr1G062100.1	Barley	mitochondrion	31.5	90.53
Bra040982.1-P	Field mustard	cytosol, mitochondrion	54.58	90.3
GRMZM5G818111_P01	Maize	cytosol	54.21	89.7
ATCG01310.1	Thale cress	cytosol, plastid	89.74	89.42
ATCG00830.1	Thale cress	cytosol, plastid	89.74	89.42
TraesCS1D01G298800.1	Wheat	plastid	39.19	85.6
HORVU0Hr1G034970.1	Barley	cytosol, mitochondrion	45.42	76.54
CDX95206	Canola	cytosol	50.55	73.8
CDY28606	Canola	cytosol	50.55	73.8
CDX91813	Canola	nucleus	49.82	72.73
KRG93952	Soybean	mitochondrion	27.47	69.44
Solyc01g007630.2.1	Tomato	nucleus	88.64	68.75
GRMZM5G827951_P01	Maize	plastid	54.21	59.92
CDY21179	Canola	plastid	50.55	51.88
Solyc10g018610.1.1	Tomato	plastid	31.14	51.2
VIT_17s0000g06990.t01	Wine grape	nucleus	28.57	46.43
Os12t0567700-01	Rice	nucleus, plasma membrane	27.47	28.74

Protein Annotations

MapMan:17.7.2.1.2	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EnsemblPlants:CAA33928	EnsemblPlantsGene:CAA33928
ProteinID:CAA33928	ProteinID:CAA33928.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015934
GO:GO:0016740	GO:GO:0019538	GO:GO:0022625	InterPro:IPR014722	InterPro:IPR014726	HAMAP:MF_01320_B
InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691
PANTHER:PTHR13691:SF5	Reactome:R-HSA-156827	Reactome:R-HSA-156902	Reactome:R-HSA-1799339	Reactome:R-HSA-192823	Reactome:R-HSA-2408557
Reactome:R-HSA-6791226	Reactome:R-HSA-72689	Reactome:R-HSA-72706	Reactome:R-HSA-72764	Reactome:R-HSA-975956	Reactome:R-HSA-975957
InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR01171
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000016D3B3	SEG:seg	:	:	:

Description

rpl2ribosomal protein L2

Coordinates

chrPt:+:132454..133938

Molecular Weight (calculated)

29913.6 Da

IEP (calculated)

11.861

GRAVY (calculated)

-0.632

Length

273 amino acids

Sequence
(BLAST)

001: TAKHLYKTPI PSTRKGTIDR QVKSNPRNNL IHGRHRCGKG RNSRGIITAR HRGGGHKRLY RKIDFRRNQK DISGRIVTIE YDPNRNAYIC LIHYGDGEKG
101: YILHPRGAII GDTIVSGTKV PISMGNALPL TDMPLGTAIH NIEITRGRGG QLARAAGAVA KLIAKEGKSA TLRLPSGEVR LVSQNCLATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGKAPIG RKKPTTPWGY PALGRRTRKR KKYSDSFILR RRK

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.