Factsheet for PGSC0003DMT400056142

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005330.1.1	Tomato	nucleus	99.62	99.62
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	97.31	97.31
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	96.54	96.54
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	95.38	95.38
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	94.62	94.62
AT2G18020.1	Thale cress	cytosol, mitochondrion	93.46	94.19
CDY29217	Canola	cytosol	55.77	94.16
CDY25126	Canola	mitochondrion	85.0	94.04
CDY20905	Canola	mitochondrion	85.0	94.04
CDY38171	Canola	mitochondrion	84.62	93.62
Bra010550.1-P	Field mustard	mitochondrion	92.69	93.41
CDY47054	Canola	extracellular	92.69	93.41
Bra039911.1-P	Field mustard	cytosol, mitochondrion	92.69	93.41
CDX69201	Canola	cytosol, mitochondrion	92.69	93.41
CDX72577	Canola	cytosol, mitochondrion	92.69	93.41
CDY24796	Canola	mitochondrion	92.31	93.02
AT4G36130.1	Thale cress	mitochondrion	92.31	93.02
GSMUA_Achr11P...	Banana	cytosol	58.85	92.73
EER96269	Sorghum	mitochondrion	93.08	92.72
Os12t0567700-01	Rice	nucleus, plasma membrane	93.08	92.72
KXG23748	Sorghum	mitochondrion	93.08	92.72
Zm00001d019473_P001	Maize	plastid	92.69	92.69
CDX75555	Canola	cytosol	63.08	92.66
TraesCS5A01G082800.1	Wheat	mitochondrion	92.69	92.34
TraesCS4D01G123700.1	Wheat	golgi	92.69	92.34
TraesCS4B01G128700.1	Wheat	mitochondrion	92.69	92.34
TraesCS4A01G189200.1	Wheat	mitochondrion	92.69	92.34
TraesCS5B01G088900.1	Wheat	mitochondrion	92.69	92.34
TraesCS5D01G095400.1	Wheat	mitochondrion	92.69	92.34
KRH28784	Soybean	mitochondrion	92.69	92.34
Zm00001d041568_P001	Maize	plasma membrane	92.31	91.95
Zm00001d030691_P001	Maize	mitochondrion	92.31	91.95
GSMUA_Achr11P...	Banana	mitochondrion	92.31	91.95
KRH08094	Soybean	nucleus	91.92	91.92
KRH69797	Soybean	mitochondrion	91.92	91.92
GSMUA_Achr5P18740_001	Banana	mitochondrion	91.92	91.57
Bra024481.1-P	Field mustard	mitochondrion	90.0	91.41
Bra011664.1-P	Field mustard	cytosol, mitochondrion	90.38	91.09
KRH76671	Soybean	mitochondrion	91.15	90.8
CDY35456	Canola	cytosol, mitochondrion	91.92	90.19
CDX90658	Canola	extracellular	89.23	89.58
Bra012864.1-P	Field mustard	mitochondrion	88.85	89.19
Bra017749.1-P	Field mustard	mitochondrion	91.54	89.14
CDY38172	Canola	nucleus	18.85	89.09
Bra037242.1-P	Field mustard	mitochondrion	53.08	87.9
HORVU5Hr1G021730.2	Barley	cytosol	92.69	85.77
CDY29006	Canola	mitochondrion	85.38	85.71
AT3G51190.1	Thale cress	mitochondrion	85.0	85.0
CDY25127	Canola	cytosol	35.0	83.49
TraesCS4A01G007200.1	Wheat	mitochondrion	82.69	82.38
TraesCS4D01G296600.1	Wheat	mitochondrion	81.92	81.61
HORVU4Hr1G077020.1	Barley	mitochondrion	81.92	81.61
EES18535	Sorghum	mitochondrion	81.54	81.54
OQU78327	Sorghum	mitochondrion	81.54	81.54
Bra039912.1-P	Field mustard	cytosol	28.08	81.11
TraesCS4B01G297800.1	Wheat	mitochondrion	81.15	80.84
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	38.46	67.57
CDY30333	Canola	extracellular	24.23	55.26
TraesCS7D01G254900.1	Wheat	cytosol	0.38	1.41

Protein Annotations

EntrezGene:102583499	MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726	UniProt:M1BZ12	InterPro:NA-bd_OB-fold	PFAM:PF00181
PFAM:PF03947	EnsemblPlantsGene:PGSC0003DMG400021812	PGSC:PGSC0003DMG400021812	EnsemblPlants:PGSC0003DMT400056142	PIRSF:PIRSF002158	ScanProsite:PS00467
PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C
InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002961FE2	RefSeq:XP_006363509.1	SEG:seg	:	:

Description

60S ribosomal protein L8 [Source:PGSC_GENE;Acc:PGSC0003DMG400021812]

Coordinates

chr12:-:8040250..8041915

Molecular Weight (calculated)

28222.3 Da

IEP (calculated)

11.437

GRAVY (calculated)

-0.501

Length

260 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR MTFRHPFRYK HQKELFVAAE GMYTGQFIYC GKKANLMVGN
101: VLALRSIPEG AVVCNVEHKV GDRGVFARCS GDYAIVISHN PDNGTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKADKA

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.