CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76671	Soybean	mitochondrion	98.08	98.08
KRH08094	Soybean	nucleus	97.7	98.08
KRH69797	Soybean	mitochondrion	97.7	98.08
GSMUA_Achr11P...	Banana	cytosol	60.15	95.15
AT4G36130.1	Thale cress	mitochondrion	93.87	94.96
VIT_04s0023g03210.t01	Wine grape	mitochondrion	93.87	94.23
CDY29217	Canola	cytosol	55.56	94.16
CDY25126	Canola	mitochondrion	84.67	94.04
CDY20905	Canola	mitochondrion	84.67	94.04
CDX69201	Canola	cytosol, mitochondrion	92.72	93.8
CDY47054	Canola	extracellular	92.72	93.8
CDX72577	Canola	cytosol, mitochondrion	92.72	93.8
Bra010550.1-P	Field mustard	mitochondrion	92.72	93.8
CDY38171	Canola	mitochondrion	84.29	93.62
Bra039911.1-P	Field mustard	cytosol, mitochondrion	92.34	93.41
CDY24796	Canola	mitochondrion	92.34	93.41
AT2G18020.1	Thale cress	cytosol, mitochondrion	92.34	93.41
CDX75555	Canola	cytosol	63.22	93.22
Os12t0567700-01	Rice	nucleus, plasma membrane	93.1	93.1
EER96269	Sorghum	mitochondrion	93.1	93.1
KXG23748	Sorghum	mitochondrion	93.1	93.1
Solyc12g005330.1.1	Tomato	nucleus	92.72	93.08
TraesCS4B01G128700.1	Wheat	mitochondrion	92.72	92.72
TraesCS4A01G189200.1	Wheat	mitochondrion	92.72	92.72
TraesCS4D01G123700.1	Wheat	golgi	92.72	92.72
TraesCS5A01G082800.1	Wheat	mitochondrion	92.72	92.72
TraesCS5B01G088900.1	Wheat	mitochondrion	92.72	92.72
TraesCS5D01G095400.1	Wheat	mitochondrion	92.72	92.72
PGSC0003DMT400056142	Potato	cytosol	92.34	92.69
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	92.34	92.69
Zm00001d019473_P001	Maize	plastid	92.34	92.69
GSMUA_Achr11P...	Banana	mitochondrion	92.34	92.34
Zm00001d030691_P001	Maize	mitochondrion	92.34	92.34
Zm00001d041568_P001	Maize	plasma membrane	92.34	92.34
Solyc07g063890.2.1	Tomato	extracellular, unclear	91.95	92.31
GSMUA_Achr5P18740_001	Banana	mitochondrion	91.95	91.95
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	91.57	91.92
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	91.19	91.54
Bra011664.1-P	Field mustard	cytosol, mitochondrion	90.42	91.47
Bra024481.1-P	Field mustard	mitochondrion	89.66	91.41
CDY35456	Canola	cytosol, mitochondrion	91.95	90.57
CDX90658	Canola	extracellular	89.66	90.35
Bra012864.1-P	Field mustard	mitochondrion	89.27	89.96
Bra037242.1-P	Field mustard	mitochondrion	54.02	89.81
Bra017749.1-P	Field mustard	mitochondrion	91.57	89.51
CDY38172	Canola	nucleus	18.39	87.27
CDY29006	Canola	mitochondrion	85.82	86.49
HORVU5Hr1G021730.2	Barley	cytosol	92.72	86.12
AT3G51190.1	Thale cress	mitochondrion	84.67	85.0
HORVU4Hr1G077020.1	Barley	mitochondrion	81.99	81.99
TraesCS4B01G297800.1	Wheat	mitochondrion	81.99	81.99
CDY25127	Canola	cytosol	34.1	81.65
TraesCS4A01G007200.1	Wheat	mitochondrion	81.61	81.61
TraesCS4D01G296600.1	Wheat	mitochondrion	80.84	80.84
EES18535	Sorghum	mitochondrion	80.46	80.77
OQU78327	Sorghum	mitochondrion	80.46	80.77
Bra039912.1-P	Field mustard	cytosol	26.82	77.78
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	37.16	65.54
CDY30333	Canola	extracellular	23.75	54.39
KRG93952	Soybean	mitochondrion	12.64	30.56
KRH09254	Soybean	nucleus	20.69	27.69
KRH38753	Soybean	mitochondrion	20.69	27.69
TraesCS7D01G254900.1	Wheat	cytosol	0.38	1.41

Protein Annotations

EntrezGene:100798311	MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EMBL:ACUP02006765
EnsemblPlantsGene:GLYMA_11G076000	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	UniProt:I1LI06	InterPro:IPR014722
InterPro:IPR014726	EnsemblPlants:KRH28784	ProteinID:KRH28784	ProteinID:KRH28784.1	HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold
PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33
InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000233D826	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:5688314..5689998

Molecular Weight (calculated)

28221.3 Da

IEP (calculated)

11.439

GRAVY (calculated)

-0.445

Length

261 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTDIIH DPGRGAPLAK VAFRHPFRYK KQMELFVAAE GLYTGQFIYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVISHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPLL KAGNAYHKFR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKT T

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.