CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69201	Canola	cytosol, mitochondrion	100.0	100.0
CDX72577	Canola	cytosol, mitochondrion	100.0	100.0
CDX75555	Canola	cytosol	68.6	100.0
CDY24796	Canola	mitochondrion	98.84	98.84
CDY25126	Canola	mitochondrion	88.37	97.02
CDY20905	Canola	mitochondrion	88.37	97.02
CDY38171	Canola	mitochondrion	87.98	96.6
AT4G36130.1	Thale cress	mitochondrion	96.51	96.51
CDY29217	Canola	cytosol	57.36	96.1
CDY35456	Canola	cytosol, mitochondrion	98.45	95.85
Bra017749.1-P	Field mustard	mitochondrion	98.84	95.51
VIT_04s0023g03210.t01	Wine grape	mitochondrion	94.19	93.46
GSMUA_Achr11P...	Banana	cytosol	59.3	92.73
KRH28784	Soybean	mitochondrion	93.8	92.72
Solyc12g005330.1.1	Tomato	nucleus	93.41	92.69
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	93.41	92.69
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	93.41	92.69
PGSC0003DMT400056142	Potato	cytosol	93.41	92.69
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	93.41	92.69
Solyc07g063890.2.1	Tomato	extracellular, unclear	93.02	92.31
CDX90658	Canola	extracellular	92.64	92.28
KRH08094	Soybean	nucleus	92.64	91.92
KRH69797	Soybean	mitochondrion	92.64	91.92
KRH76671	Soybean	mitochondrion	92.64	91.57
GSMUA_Achr11P...	Banana	mitochondrion	92.25	91.19
GSMUA_Achr5P18740_001	Banana	mitochondrion	91.86	90.8
Os12t0567700-01	Rice	nucleus, plasma membrane	91.47	90.42
KXG23748	Sorghum	mitochondrion	91.47	90.42
Zm00001d041568_P001	Maize	plasma membrane	91.47	90.42
Zm00001d030691_P001	Maize	mitochondrion	91.47	90.42
EER96269	Sorghum	mitochondrion	91.47	90.42
Zm00001d019473_P001	Maize	plastid	91.09	90.38
TraesCS5B01G088900.1	Wheat	mitochondrion	90.7	89.66
TraesCS5A01G082800.1	Wheat	mitochondrion	90.7	89.66
TraesCS4D01G123700.1	Wheat	golgi	90.7	89.66
TraesCS4B01G128700.1	Wheat	mitochondrion	90.7	89.66
TraesCS4A01G189200.1	Wheat	mitochondrion	90.7	89.66
TraesCS5D01G095400.1	Wheat	mitochondrion	90.7	89.66
CDY29006	Canola	mitochondrion	89.53	89.19
HORVU5Hr1G021730.2	Barley	cytosol	90.7	83.27
HORVU4Hr1G077020.1	Barley	mitochondrion	83.33	82.38
TraesCS4B01G297800.1	Wheat	mitochondrion	83.33	82.38
TraesCS4A01G007200.1	Wheat	mitochondrion	83.33	82.38
CDY38172	Canola	nucleus	17.44	81.82
TraesCS4D01G296600.1	Wheat	mitochondrion	82.56	81.61
EES18535	Sorghum	mitochondrion	81.4	80.77
OQU78327	Sorghum	mitochondrion	81.4	80.77
CDY25127	Canola	cytosol	33.33	78.9
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	36.82	64.19
CDY30333	Canola	extracellular	22.48	50.88
CDX99954	Canola	cytosol	20.93	38.03
CDX95206	Canola	cytosol	22.87	31.55
CDY28606	Canola	cytosol	22.87	31.55
CDX91813	Canola	nucleus	22.87	31.55
CDX79785	Canola	mitochondrion, plastid	20.16	24.3
CDY17889	Canola	mitochondrion, plastid	20.16	24.19
CDX83442	Canola	mitochondrion, plastid	20.16	24.07
CDX95586	Canola	mitochondrion, plastid	20.16	23.96
CDY21179	Canola	plastid	22.87	22.18
CDY30453	Canola	mitochondrion	10.85	17.07
CDX95204	Canola	cytosol, plastid	11.63	16.67
CDY23415	Canola	plastid	12.02	11.65
TraesCS7D01G254900.1	Wheat	cytosol	0.39	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:A0A078BWL0	UniProt:A0A078BWL0
EnsemblPlants:CDY47054	ProteinID:CDY47054	ProteinID:CDY47054.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00086663001	InterPro:IPR014722	InterPro:IPR014726
HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467
PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C
InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104
SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EC8BF0	:	:	:

Description

BnaAnng08420DBnaAnng08420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078BWL0]

Coordinates

chrLK032695:+:142434..145136

Molecular Weight (calculated)

28005.0 Da

IEP (calculated)

11.360

GRAVY (calculated)

-0.497

Length

258 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRYK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVISHN PDNDTTRVKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AALASKQE

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.