Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040982.1-P | Field mustard | cytosol, mitochondrion | 100.0 | 100.0 |
| HORVU0Hr1G034930.1 | Barley | cytosol, mitochondrion | 100.0 | 100.0 |
| HORVU3Hr1G048800.1 | Barley | cytosol, mitochondrion | 100.0 | 100.0 |
| HORVU7Hr1G091650.3 | Barley | cytosol, mitochondrion | 100.0 | 100.0 |
| TraesCSU01G246600.1 | Wheat | cytosol, mitochondrion | 98.79 | 98.79 |
| HORVU2Hr1G070550.1 | Barley | cytosol, mitochondrion | 98.79 | 98.79 |
| HORVU5Hr1G004660.1 | Barley | cytosol, mitochondrion | 98.79 | 98.79 |
| HORVU5Hr1G064920.1 | Barley | cytosol, mitochondrion | 97.58 | 97.58 |
| TraesCS3B01G469800.1 | Wheat | cytosol, mitochondrion | 96.97 | 96.97 |
| TraesCS3A01G431300.1 | Wheat | cytosol, mitochondrion | 90.91 | 96.77 |
| HORVU2Hr1G062100.1 | Barley | mitochondrion | 52.12 | 90.53 |
| CDX99954 | Canola | cytosol | 77.58 | 90.14 |
| TraesCS4A01G153600.1 | Wheat | cytosol, mitochondrion | 89.7 | 89.7 |
| HORVU2Hr1G121550.1 | Barley | mitochondrion | 46.06 | 89.41 |
| HORVU0Hr1G034970.1 | Barley | cytosol, mitochondrion | 84.85 | 86.42 |
| HORVU0Hr1G026890.2 | Barley | mitochondrion | 76.97 | 83.55 |
| HORVU4Hr1G013620.1 | Barley | mitochondrion | 33.33 | 79.71 |
| HORVU3Hr1G074880.1 | Barley | cytosol | 42.42 | 73.68 |
| KRG93952 | Soybean | mitochondrion | 47.27 | 72.22 |
| CDY28606 | Canola | cytosol | 80.61 | 71.12 |
| CDX95206 | Canola | cytosol | 80.61 | 71.12 |
| CDX91813 | Canola | nucleus | 79.39 | 70.05 |
| ATCG01310.1 | Thale cress | cytosol, plastid | 83.64 | 50.37 |
| ATCG00830.1 | Thale cress | cytosol, plastid | 83.64 | 50.37 |
| CDY21179 | Canola | plastid | 80.61 | 50.0 |
| Solyc10g018610.1.1 | Tomato | plastid | 50.3 | 50.0 |
| VIT_17s0000g06990.t01 | Wine grape | nucleus | 45.45 | 44.64 |
| Solyc01g007630.2.1 | Tomato | nucleus | 81.82 | 38.35 |
| HORVU5Hr1G005390.1 | Barley | cytosol | 10.91 | 25.35 |
| HORVU5Hr1G064940.1 | Barley | cytosol | 10.91 | 25.35 |
| HORVU4Hr1G077020.1 | Barley | mitochondrion | 34.55 | 21.84 |
| HORVU5Hr1G021730.2 | Barley | cytosol | 32.12 | 18.86 |
| HORVU3Hr1G001530.1 | Barley | plastid | 40.0 | 18.38 |
| HORVU1Hr1G002310.1 | Barley | mitochondrion, plastid | 40.0 | 18.33 |
| HORVU5Hr1G032290.1 | Barley | cytosol, plastid | 7.27 | 9.02 |
| HORVU0Hr1G028650.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU0Hr1G026950.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU0Hr1G026900.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU0Hr1G032910.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU0Hr1G033410.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU0Hr1G026770.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU0Hr1G026230.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU0Hr1G034040.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU0Hr1G034600.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.30.30.30 | MapMan:35.1 | Gene3D:4.10.950.10 | UniProt:A0A287XBE1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003735 | GO:GO:0003824 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0016740 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU0Hr1G036520 | EnsemblPlants:HORVU0Hr1G036520.1 | InterPro:IPR014722 | InterPro:IPR014726 | PFAM:PF03947 | ScanProsite:PS00467 |
| PANTHER:PTHR13691 | PANTHER:PTHR13691:SF25 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L2 | InterPro:Ribosomal_L2_C | InterPro:Ribosomal_L2_CS |
| InterPro:Ribosomal_L2_bac/org-type | InterPro:Ribosomal_L2_dom3 | SMART:SM01382 | SUPFAM:SSF50104 | TIGRFAMs:TIGR01171 | InterPro:Translation_prot_SH3-like_sf |
| UniParc:UPI000253EB50 | SEG:seg | : | : | : | : |
Description
30S ribosomal protein S3, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287XBE1]
Coordinates
chrchrUn:+:226329637..226330134
Molecular Weight (calculated)
17988.1 Da
IEP (calculated)
11.886
GRAVY (calculated)
-0.563
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MLWKKLVQFG KGFFERKEES TSTDMPLGTA MHNIEITRGR GGQLARAAGA VAKLIAKEGK SATLRLPSGE VRLVSQNCLA TVGQVGNVGV NQKSLGRAGS
101: KCWLGKRPVV RGVVMNPVDH PHGGGEGKAP IGRKKPTTPW GYPALGRRTR KRKKYSDSFI LRRRK
101: KCWLGKRPVV RGVVMNPVDH PHGGGEGKAP IGRKKPTTPW GYPALGRRTR KRKKYSDSFI LRRRK
001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK
Arabidopsis Description
rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.