CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
golgi 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92945
KRG93576
KRG96492
KRH18448
KRH33850
KRH40042
KRH68233

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	KRG96492	AT4G02195.1	10888666
AT1G77140.1	KRH68233	AT4G02195.1	10888666
AT1G77140.1	KRG92945	AT5G26980.1	10888666
AT1G77140.1	KRH33850	AT5G26980.1	10888666
AT1G77140.1	KRG93576	AT5G39510.1	10888666
AT1G77140.1	KRH18448	AT5G39510.1	10888666
AT1G77140.1	KRH40042	AT5G39510.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53395	Soybean	cytosol	98.42	98.42
VIT_18s0001g15600.t01	Wine grape	cytosol	89.26	89.26
Solyc04g064820.2.1	Tomato	cytosol, nucleus	85.56	85.56
CDX79189	Canola	cytosol	41.2	85.09
CDY70457	Canola	cytosol	53.35	84.64
AT1G77140.1	Thale cress	cytosol	84.33	84.18
Bra008294.1-P	Field mustard	cytosol	84.15	84.01
GSMUA_Achr10P...	Banana	cytosol	83.45	83.89
CDY38360	Canola	cytosol	83.98	83.83
TraesCS2D01G259600.1	Wheat	cytosol	78.35	78.48
TraesCS2B01G277800.2	Wheat	cytosol	78.35	78.48
TraesCS2A01G264300.1	Wheat	cytosol	78.35	78.48
Os02t0437800-02	Rice	cytosol, plasma membrane	77.64	77.78
EES13788	Sorghum	cytosol	77.29	77.42
CDX79215	Canola	cytosol	55.99	76.81
CDY13575	Canola	cytosol	75.18	74.52
HORVU2Hr1G062800.7	Barley	cytosol, plastid	78.17	70.7
Zm00001d049522_P001	Maize	cytosol, plasma membrane	78.17	70.14
CDX79222	Canola	cytosol, mitochondrion	23.59	49.45
KRH04038	Soybean	cytosol	21.48	18.32
KRH57307	Soybean	cytosol, nucleus	21.3	18.2
KRH58359	Soybean	endoplasmic reticulum	19.89	18.17
KRH42240	Soybean	endoplasmic reticulum, nucleus	19.72	18.01
KRH28021	Soybean	nucleus	20.77	17.8
KRH65274	Soybean	cytosol	20.6	17.49
KRH76261	Soybean	nucleus	20.6	17.46
KRH77416	Soybean	cytosol	20.77	17.38

Protein Annotations

Gene3D:1.25.40.60	EntrezGene:100782786	MapMan:22.7.7.1	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10
EMBL:ACUP02002767	EnsemblPlantsGene:GLYMA_04G240400	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987
GO:GO:0016192	UniProt:I1JYX2	InterPro:IPR027482	EnsemblPlants:KRH64544	ProteinID:KRH64544	ProteinID:KRH64544.1
PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF3	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2
InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI000233A09A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:50872815..50880400

Molecular Weight (calculated)

64938.2 Da

IEP (calculated)

6.757

GRAVY (calculated)

-0.241

Length

568 amino acids

Sequence
(BLAST)

001: MVVTSSARDY INRILQDISG MKVLILDSQT VGIVSVVYSQ SELLQKEVFL VELVDSISKS NESMSHLKAV YFLRPTSENI QLLRRQLASP RFGEYHLFFS
101: NILKDTQIHL LADSDEQEVV QQVQEFYADF VAIDPYHFTL HVPSHYIYML PAMVDPSTVQ RFSDRVVDGL AALFLALKRR PVIRYQRTSD IAKRIAQEAA
201: KLMYQEESGL FDFRRMEVSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG IQDNKVDLKS IGKFPKDQEE VVLSSEQDSF FKANMYENFG DIGMNIKRMV
301: DEFQQVSKSN QNIQTIEDMA KFVDNYPEYR KMHGNVTKHV TLVTEMSKIV EERKLMSVSQ TEQELACNGG QGAAFEAVTN LLNNESISDV DRLRLVMLYA
401: LRYEKDSPVQ LMQLFNKLAS RSAKYKPGLV QFLLKQAGVD KRTGDLFGNR DLMNIARNMA RGLKGVENVY TQHQPLLFQI MESIVKGRLR DVDYPFIGNH
501: FQQGRPQDVI IFIVGGTTYE ESRSVALQNA SNTGIRFILG GSSVLNSKRF LRDLEEAQRV ARSSTTVI

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.