CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH03646
KRH07229
KRH07476
KRH14588
KRH20159
KRH31520
KRH39570
KRH56393
KRH62532
KRH73537
KRH74378
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39510.1	KRG97393	AT1G27300.1	21798944
AT5G39510.1	KRH31520	AT1G27300.1	21798944
AT5G39510.1	KRH76090	AT1G27300.1	21798944
AT5G39510.1	KRH56393	AT4G26455.1	21798944
AT5G39510.1	KRH62532	AT4G26455.1	21798944
AT5G39510.1	KRH03646	AT4G32150.1	24556575
AT5G39510.1	KRH14588	AT4G32150.1	24556575
AT5G39510.1	KRH20159	AT4G32150.1	24556575
AT5G39510.1	KRH73537	AT4G32150.1	24556575
AT5G39510.1	KRH07229	AT5G46860.1	12815100
AT5G39510.1	KRH07476	AT5G46860.1	12815100
AT5G39510.1	KRH39570	AT5G46860.1	12815100
AT5G39510.1	KRH74378	AT5G46860.1	12815100

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18448	Soybean	endoplasmic reticulum	70.48	72.4
KRG93576	Soybean	cytosol	69.6	71.49
Solyc03g115760.2.1	Tomato	nucleus, plastid	65.64	67.42
PGSC0003DMT400050219	Potato	cytosol	65.64	67.42
VIT_14s0108g01200.t01	Wine grape	cytosol	63.44	65.16
KRH63296	Soybean	cytosol	25.11	64.77
Bra036218.1-P	Field mustard	cytosol	61.67	63.35
CDY19995	Canola	cytosol	61.67	63.35
CDY00099	Canola	cytosol	61.23	62.9
AT5G39510.1	Thale cress	cytosol, golgi, nucleus	60.35	61.99
KRH54584	Soybean	cytosol	59.91	61.54
CDY37005	Canola	cytosol, golgi, nucleus	59.47	61.09
AT3G29100.3	Thale cress	cytosol	59.47	61.09
CDY30250	Canola	cytosol, golgi, nucleus	58.59	60.18
CDX74451	Canola	cytosol, golgi, nucleus	58.59	60.18
Bra040987.1-P	Field mustard	cytosol, golgi, nucleus	58.59	60.18
KRH74936	Soybean	endoplasmic reticulum	55.95	57.21
KRH70794	Soybean	endoplasmic reticulum	54.19	55.41
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	16.74	41.3
Bra025661.1-P	Field mustard	cytosol, golgi, mitochondrion, nucleus, plastid	16.74	41.3
CDX95233	Canola	mitochondrion	16.3	40.22
AT5G39630.1	Thale cress	cytosol	35.24	38.65

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	EntrezGene:100786259	MapMan:22.7.2.1	EMBL:ACUP02006014	ncoils:Coil
EnsemblPlantsGene:GLYMA_09G234700	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005783
GO:GO:0005789	GO:GO:0005794	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006886
GO:GO:0006888	GO:GO:0006891	GO:GO:0006896	GO:GO:0008150	GO:GO:0009987	GO:GO:0012507
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0031902
GO:GO:0042147	GO:GO:0048280	InterPro:IPR038407	UniProt:K7LFP0	EnsemblPlants:KRH40042	ProteinID:KRH40042
ProteinID:KRH40042.1	ProteinID:KRH40043.1	PFAM:PF05008	PFAM:PF12352	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52
InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI000233848B	InterPro:Vesicle_trsprt_v-SNARE_N
SEG:seg	InterPro:v-SNARE_N_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:45722176..45725018

Molecular Weight (calculated)

25782.2 Da

IEP (calculated)

7.557

GRAVY (calculated)

-0.462

Length

227 amino acids

Sequence
(BLAST)

001: MSCGEFEGYE RQYCELSANL SKACIDNVAA PLNGELKKQK KSEIKEGIEE GEALIRKMDL DARSLQPDLK AVLLAKVREY KADLNNIKRE VKKIISADLN
101: PSSARDELLE STMTNAMMKA SADHRERERL MISTERLNKS SDRINDSRGT MLETEDLGIS ILQDLHSQRQ SLLHTHDTLH GVDDNTDKSK KILSNMSRRM
201: DKSKWILSTI AVLLIFVIIL IVYFKLS

Best Arabidopsis Sequence Match ( AT1G26670.1 )
(BLAST)

001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH

Arabidopsis Description

VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.