CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93576
KRH07229
KRH07476
KRH18448
KRH39570
KRH40042
KRH74378

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	KRG93576	AT5G39510.1	24556609
AT4G32150.1	KRH18448	AT5G39510.1	24556609
AT4G32150.1	KRH40042	AT5G39510.1	24556609
AT4G32150.1	KRH07229	AT5G46860.1	24556609
AT4G32150.1	KRH07476	AT5G46860.1	24556609
AT4G32150.1	KRH39570	AT5G46860.1	24556609
AT4G32150.1	KRH74378	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73537	Soybean	endoplasmic reticulum	98.63	98.63
CDY61387	Canola	endoplasmic reticulum, plasma membrane	84.02	84.02
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	84.02	84.02
CDX75224	Canola	endoplasmic reticulum, plasma membrane	84.02	83.64
CDX69781	Canola	plasma membrane	83.11	82.35
CDX68821	Canola	endoplasmic reticulum, plasma membrane	82.65	82.27
GSMUA_Achr6P35140_001	Banana	plasma membrane	81.74	81.36
CDX97084	Canola	plasma membrane	81.74	81.0
AT4G32150.1	Thale cress	golgi, plasma membrane	80.82	80.82
Bra008987.1-P	Field mustard	mitochondrion	81.28	80.54
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	79.91	79.55
AT2G25340.1	Thale cress	endoplasmic reticulum, plasma membrane	79.0	79.0
AT5G11150.2	Thale cress	golgi, plasma membrane	79.91	77.43
OQU75937	Sorghum	plasma membrane	74.43	73.76
Os06t0174400-01	Rice	plasma membrane	73.06	72.4
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	72.15	71.49
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	72.15	71.49
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	71.69	71.04
Os02t0803600-01	Rice	plasma membrane	69.41	67.26
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	70.32	66.09
EES05972	Sorghum	cytosol	68.49	65.79
KRH03646	Soybean	plasma membrane	67.58	65.78
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	69.86	65.67
KRH20159	Soybean	plastid	67.12	65.62
Zm00001d018408_P001	Maize	cytosol	67.58	65.49
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	69.41	65.24
Zm00001d037483_P002	Maize	plasma membrane	74.89	64.57
HORVU7Hr1G028250.1	Barley	peroxisome, plasma membrane	70.32	62.6
KRH25265	Soybean	plasma membrane	53.42	53.18
KRH30399	Soybean	endoplasmic reticulum	52.97	52.73
Bra011325.1-P	Field mustard	endoplasmic reticulum	78.54	47.12
KRH36720	Soybean	endoplasmic reticulum	39.73	39.37
KRH11727	Soybean	cytosol	39.73	39.37
KRH46773	Soybean	endoplasmic reticulum	39.27	38.91
KRG99810	Soybean	endoplasmic reticulum	38.81	38.46
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	37.44	37.1
KRG89410	Soybean	cytosol	37.44	36.44
KRH50475	Soybean	endoplasmic reticulum	37.44	36.44
KRH02246	Soybean	cytosol	34.25	33.94
KRH50864	Soybean	cytosol	33.79	33.48
KRH33448	Soybean	extracellular, golgi	9.59	33.33
KRH12042	Soybean	cytosol	33.33	33.03
KRH37118	Soybean	cytosol	32.88	32.29
KRH36005	Soybean	endoplasmic reticulum	34.7	31.93
KRH33450	Soybean	cytosol	25.57	31.82
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	31.96	27.67
KRG99807	Soybean	cytosol	26.94	26.7
KRH57708	Soybean	plastid	10.5	19.49

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100820063	MapMan:22.7.5.1	Gene3D:3.30.450.50	EMBL:ACUP02008506	EnsemblPlantsGene:GLYMA_14G035500
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	UniProt:I1M751	InterPro:IPR001388	InterPro:IPR010908	EnsemblPlants:KRH14588	ProteinID:KRH14588
ProteinID:KRH14588.1	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219
ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF104	SMART:SM01270
SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI000233B9E1	SEG:seg

Description

hypothetical protein

Coordinates

chr14:+:2652308..2655588

Molecular Weight (calculated)

24971.3 Da

IEP (calculated)

9.762

GRAVY (calculated)

-0.116

Length

219 amino acids

Sequence
(BLAST)

001: MGILYALVGR GSVVLAEFSG TTTNASAIAR QILEKTPGNN DMHVSYSQDR YIFHVKRTDG LTVLCMADDT AGRRIPFAFL EDIHQKFVRT YGRAVHSAQP
101: YGMNEEFSRI LSQQMEYYSS DPNADRINRL KGEMSQVRNV MIENIDKVLD RGDRLELLVD KTANMQGNTF RFRKQARRFR STVWWRNVKL TIALIVVLLV
201: IVYVVLAFVC HGPALPSCF

Best Arabidopsis Sequence Match ( AT5G11150.1 )
(BLAST)

001: MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K

Arabidopsis Description

ATVAMP713vesicle-associated membrane protein 713 [Source:TAIR;Acc:AT5G11150]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.