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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 4
  • golgi 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX97084 Canola plasma membrane 98.64 98.64
Bra008987.1-P Field mustard mitochondrion 98.19 98.19
AT5G11150.2 Thale cress golgi, plasma membrane 90.05 88.05
CDY61387 Canola endoplasmic reticulum, plasma membrane 84.62 85.39
CDX75224 Canola endoplasmic reticulum, plasma membrane 84.16 84.55
CDX68821 Canola endoplasmic reticulum, plasma membrane 83.71 84.09
KRH73537 Soybean endoplasmic reticulum 82.81 83.56
VIT_04s0008g05650.t01 Wine grape extracellular 82.81 83.18
KRH14588 Soybean endoplasmic reticulum 82.35 83.11
PGSC0003DMT400067225 Potato mitochondrion 79.64 80.0
Solyc06g065950.2.1 Tomato endoplasmic reticulum, nucleus 78.73 79.09
GSMUA_Achr9P09180_001 Banana endoplasmic reticulum, plasma membrane 77.38 77.73
GSMUA_Achr6P35140_001 Banana plasma membrane 76.47 76.82
OQU75937 Sorghum plasma membrane 71.95 71.95
Os06t0174400-01 Rice plasma membrane 70.59 70.59
TraesCS7A01G136300.1 Wheat plasma membrane, plastid 69.68 69.68
TraesCS7B01G037300.1 Wheat plasma membrane, plastid 69.68 69.68
TraesCS7D01G136300.1 Wheat endoplasmic reticulum, plasma membrane 69.23 69.23
KRH20159 Soybean plastid 68.33 67.41
KRH03646 Soybean plasma membrane 68.33 67.11
EES05972 Sorghum cytosol 67.42 65.35
Os02t0803600-01 Rice plasma membrane 66.52 65.04
Zm00001d018408_P001 Maize cytosol 66.06 64.6
Zm00001d037483_P002 Maize plasma membrane 71.95 62.6
TraesCS6A01G371800.1 Wheat cytosol, mitochondrion, peroxisome, plastid 65.16 61.8
HORVU7Hr1G028250.1 Barley peroxisome, plasma membrane 68.78 61.79
TraesCS6D01G355800.1 Wheat cytosol, mitochondrion, peroxisome, plastid 64.71 61.37
TraesCS6B01G409400.1 Wheat cytosol, mitochondrion, peroxisome, plastid 64.25 60.94
CDY09133 Canola endoplasmic reticulum 55.2 55.2
CDX88799 Canola plasma membrane 53.39 53.39
CDX70999 Canola endoplasmic reticulum 52.94 52.94
CDX86608 Canola endoplasmic reticulum 39.82 40.18
CDY18254 Canola endoplasmic reticulum 39.37 39.55
CDX89793 Canola endoplasmic reticulum 39.37 39.55
CDY15521 Canola endoplasmic reticulum 38.91 39.27
CDY12188 Canola cytosol 38.91 39.09
CDX79510 Canola endoplasmic reticulum 38.91 38.74
CDY06150 Canola cytosol 38.46 38.64
CDX79466 Canola endoplasmic reticulum 30.77 38.64
CDY10053 Canola endoplasmic reticulum 38.46 38.64
CDY17139 Canola cytosol, extracellular 38.91 38.56
CDY19450 Canola cytosol, extracellular 38.91 38.56
CDX84702 Canola endoplasmic reticulum 38.46 38.29
CDX84731 Canola cytosol 37.56 37.73
CDY59642 Canola endoplasmic reticulum 30.32 37.64
CDY48527 Canola cytosol 12.22 37.5
CDY19156 Canola cytosol 24.43 37.5
CDY48531 Canola cytosol 37.1 37.27
CDY19154 Canola cytosol 36.65 36.82
CDY37751 Canola endoplasmic reticulum, extracellular, plasma membrane 36.2 36.53
CDY44179 Canola cytosol 33.94 33.78
CDY07551 Canola cytosol 36.65 33.75
CDY23768 Canola endoplasmic reticulum, extracellular, plasma membrane 25.34 33.53
CDY22900 Canola cytosol, plasma membrane, plastid 33.48 33.33
CDX73490 Canola plasma membrane 36.2 33.2
CDY13199 Canola plasma membrane 29.86 33.17
CDX76153 Canola cytosol 36.2 33.06
CDX78228 Canola cytosol, plasma membrane 35.75 32.92
CDX67594 Canola cytosol 35.75 32.78
CDY59643 Canola extracellular 10.41 31.08
CDY23767 Canola extracellular 14.03 28.97
CDX79465 Canola extracellular 10.41 26.74
CDY22757 Canola cytosol 24.43 26.73
Protein Annotations
Gene3D:1.20.5.110MapMan:22.7.5.1Gene3D:3.30.450.50GO:A0A078BYG7EnsemblPlants:CDX69781ProteinID:CDX69781
ProteinID:CDX69781.1GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0016192EnsemblPlantsGene:GSBRNA2T00135828001InterPro:IPR001388InterPro:IPR010908InterPro:Longin-like_dom_sfInterPro:Longin_dom
PFAM:PF00957PFAM:PF13774PRINTS:PR00219ScanProsite:PS00417PFscan:PS50859PFscan:PS50892
PANTHER:PTHR21136PANTHER:PTHR21136:SF104SMART:SM01270SUPFAM:SSF58038SUPFAM:SSF64356InterPro:Synaptobrevin
TMHMM:TMhelixUniParc:UPI0004EDAF6BSEG:seg:::
Description
BnaA10g21300D
Coordinates
chrLK031790:+:1822685..1824287
Molecular Weight (calculated)
25185.4 Da
IEP (calculated)
9.350
GRAVY (calculated)
-0.100
Length
221 amino acids
Sequence
(BLAST)
001: MAILYALVAR GSVVLSEFSA TSTNASSIAK QILEKLPGED VDSHVSYSQD RYVFHVKRTD GLTVLCMADE TAGRSVPFAF LEEIHQRFVR TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEYYS NDPNADRVSR IKGEMTQVRN VMIENIDKVL DRGERLELLV DKTANMQGNT FRFRKQARRF RSVMWWRNVK LTIALILVLA
201: VVVYIAMAFV CHGPSLPSCF K
Best Arabidopsis Sequence Match ( AT5G11150.1 )
(BLAST)
001: MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K
Arabidopsis Description
ATVAMP713vesicle-associated membrane protein 713 [Source:TAIR;Acc:AT5G11150]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.