CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021804.1-P	Field mustard	cytosol	98.64	98.64
CDY19154	Canola	cytosol	97.27	97.27
CDX84731	Canola	cytosol	94.09	94.09
CDY12188	Canola	cytosol	92.27	92.27
CDY19156	Canola	cytosol	58.64	89.58
AT1G04760.2	Thale cress	cytosol	86.82	86.82
CDX79466	Canola	endoplasmic reticulum	68.18	85.23
CDY59643	Canola	extracellular	28.64	85.14
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	84.55	84.93
CDX86608	Canola	endoplasmic reticulum	84.55	84.93
Os07t0194000-01	Rice	plasma membrane	84.55	84.55
GSMUA_Achr7P01760_001	Banana	plasma membrane	84.09	84.47
CDY18254	Canola	endoplasmic reticulum	84.09	84.09
VIT_05s0136g00290.t01	Wine grape	extracellular	84.09	84.09
CDX89793	Canola	endoplasmic reticulum	84.09	84.09
CDX84702	Canola	endoplasmic reticulum	84.55	83.78
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	83.18	83.56
CDY15521	Canola	endoplasmic reticulum	83.18	83.56
CDY17139	Canola	cytosol, extracellular	84.09	82.96
EER96027	Sorghum	extracellular	83.64	82.88
CDX79510	Canola	endoplasmic reticulum	83.64	82.88
Zm00001d007767_P001	Maize	extracellular	83.64	82.88
CDY10053	Canola	endoplasmic reticulum	82.73	82.73
CDY19450	Canola	cytosol, extracellular	83.64	82.51
CDY06150	Canola	cytosol	82.27	82.27
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.27	82.27
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	81.82	82.19
GSMUA_Achr9P11030_001	Banana	cytosol	81.82	82.19
Os03t0803000-01	Rice	plasma membrane	81.82	81.82
GSMUA_Achr2P17740_001	Banana	cytosol	80.91	81.28
CDY59642	Canola	endoplasmic reticulum	65.45	80.9
CDY48527	Canola	cytosol	26.36	80.56
TraesCS5B01G457700.1	Wheat	vacuole	80.45	79.73
TraesCS5D01G459900.1	Wheat	vacuole	80.45	79.73
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.45	79.37
TraesCS5A01G449900.1	Wheat	unclear	80.45	79.37
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	76.36	76.71
CDX79465	Canola	extracellular	29.09	74.42
AT2G32670.1	Thale cress	endoplasmic reticulum, golgi	90.91	70.18
Zm00001d013055_P002	Maize	extracellular, plasma membrane	74.55	69.49
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.73	69.46
Zm00001d019091_P002	Maize	vacuole	82.27	69.35
CDY22900	Canola	cytosol, plasma membrane, plastid	68.18	67.57
CDY44179	Canola	cytosol	67.73	67.12
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	65.0	65.0
CDY23767	Canola	extracellular	30.0	61.68
CDX67594	Canola	cytosol	59.09	53.94
CDY07551	Canola	cytosol	58.64	53.75
CDX76153	Canola	cytosol	58.64	53.31
CDX78228	Canola	cytosol, plasma membrane	57.27	52.5
CDX73490	Canola	plasma membrane	56.82	51.87
CDY22757	Canola	cytosol	47.27	51.49
CDY13199	Canola	plasma membrane	45.0	49.75
CDX97084	Canola	plasma membrane	37.27	37.1
CDX69781	Canola	plasma membrane	37.27	37.1
CDY61387	Canola	endoplasmic reticulum, plasma membrane	36.36	36.53
CDX75224	Canola	endoplasmic reticulum, plasma membrane	36.36	36.36
CDX70999	Canola	endoplasmic reticulum	35.91	35.75
CDX88799	Canola	plasma membrane	35.91	35.75
CDX68821	Canola	endoplasmic reticulum, plasma membrane	35.45	35.45
CDY09133	Canola	endoplasmic reticulum	35.45	35.29
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	68.64	33.71
PGSC0003DMT400043452	Potato	cytosol	49.55	29.54
Solyc12g098170.1.1	Tomato	cytosol	17.27	12.46

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:A0A078IEX2	UniProt:A0A078IEX2
EnsemblPlants:CDY48531	ProteinID:CDY48531	ProteinID:CDY48531.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00091244001	InterPro:IPR001388	InterPro:IPR010908
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417
PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF120	SMART:SM01270	SUPFAM:SSF58038
SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0004EE08D3	SEG:seg	:

Description

BnaC04g43180DBnaC04g43180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEX2]

Coordinates

chrLK032777:-:67451..68963

Molecular Weight (calculated)

24967.5 Da

IEP (calculated)

9.177

GRAVY (calculated)

-0.195

Length

220 amino acids

Sequence
(BLAST)

001: MGQKNLIYSF VGRGTVILVE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLVE NGFTYCVVAV EAVGRQIPMA FLERIKEDFS NRYGGGKATN
101: AKPNSLNKEF GSKLKEHMQY CVDHPEEINK LAKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTEDLR SHAQDFRTQG TKIRRKMWWE NMKIKLIVAG
201: IIIALILIII ISVCPGFKCT

Best Arabidopsis Sequence Match ( AT2G32670.1 )
(BLAST)

001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT

Arabidopsis Description

VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.