Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 6
- extracellular 5
- plastid 2
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84731 | Canola | cytosol | 72.98 | 94.55 |
| Bra022893.1-P | Field mustard | cytosol | 72.98 | 94.55 |
| CDY12188 | Canola | cytosol | 72.28 | 93.64 |
| Bra005568.1-P | Field mustard | cytosol | 72.28 | 93.64 |
| Bra021804.1-P | Field mustard | cytosol | 71.23 | 92.27 |
| CDY19154 | Canola | cytosol | 70.88 | 91.82 |
| CDY48531 | Canola | cytosol | 70.18 | 90.91 |
| AT1G04760.2 | Thale cress | cytosol | 69.82 | 90.45 |
| AT1G04750.1 | Thale cress | endoplasmic reticulum, golgi | 68.77 | 89.5 |
| VIT_05s0136g00290.t01 | Wine grape | extracellular | 68.07 | 88.18 |
| AT2G33120.2 | Thale cress | golgi | 69.82 | 86.9 |
| CDY59643 | Canola | extracellular | 22.46 | 86.49 |
| CDX79466 | Canola | endoplasmic reticulum | 52.63 | 85.23 |
| CDY19156 | Canola | cytosol | 42.46 | 84.03 |
| CDY59642 | Canola | endoplasmic reticulum | 51.23 | 82.02 |
| AT2G33110.1 | Thale cress | extracellular, golgi | 58.25 | 76.5 |
| CDX79465 | Canola | extracellular | 22.81 | 75.58 |
| AT4G15780.1 | Thale cress | cytosol | 44.56 | 69.02 |
| CDY23767 | Canola | extracellular | 23.51 | 62.62 |
| AT3G54300.3 | Thale cress | cytosol | 48.42 | 57.5 |
| AT3G24890.2 | Thale cress | cytosol | 22.81 | 52.42 |
| AT4G32150.1 | Thale cress | golgi, plasma membrane | 29.47 | 38.36 |
| AT5G11150.2 | Thale cress | golgi, plasma membrane | 30.18 | 38.05 |
| AT5G22360.1 | Thale cress | plasma membrane | 29.12 | 37.56 |
| AT2G25340.1 | Thale cress | endoplasmic reticulum, plasma membrane | 27.02 | 35.16 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.4 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | EntrezGene:817827 | ProteinID:AAC04496.1 |
| ProteinID:AEC08714.1 | EMBL:AK118318 | ArrayExpress:AT2G32670 | EnsemblPlantsGene:AT2G32670 | RefSeq:AT2G32670 | TAIR:AT2G32670 |
| RefSeq:AT2G32670-TAIR-G | EnsemblPlants:AT2G32670.1 | TAIR:AT2G32670.1 | Symbol:ATVAMP725 | Unigene:At.38037 | EMBL:BT006042 |
| GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0031901 | InterPro:IPR001388 |
| InterPro:IPR010908 | InterPro:Longin-like_dom_sf | InterPro:Longin_dom | RefSeq:NP_180826.2 | UniProt:O48850 | PFAM:PF00957 |
| PFAM:PF13774 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00219 | ScanProsite:PS00417 | PFscan:PS50859 |
| PFscan:PS50892 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF120 | SMART:SM01270 | SUPFAM:SSF58038 | SUPFAM:SSF64356 |
| SignalP:SignalP-TM | InterPro:Synaptobrevin | TMHMM:TMhelix | UniParc:UPI00000ADF01 | SEG:seg | : |
Description
VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
Coordinates
chr2:+:13857877..13859774
Molecular Weight (calculated)
32693.1 Da
IEP (calculated)
9.996
GRAVY (calculated)
-0.038
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.