Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P15290_001 | Banana | cytosol, endoplasmic reticulum | 50.81 | 28.77 |
| Os07t0194000-01 | Rice | plasma membrane | 50.81 | 28.64 |
| GSMUA_Achr9P25440_001 | Banana | cytosol, vacuole | 50.0 | 28.31 |
| GSMUA_Achr9P11030_001 | Banana | cytosol | 50.0 | 28.31 |
| GSMUA_Achr2P17740_001 | Banana | cytosol | 50.0 | 28.31 |
| AT1G04760.2 | Thale cress | cytosol | 50.0 | 28.18 |
| Os03t0803000-01 | Rice | plasma membrane | 50.0 | 28.18 |
| Zm00001d007767_P001 | Maize | extracellular | 50.0 | 27.93 |
| EER96027 | Sorghum | extracellular | 50.0 | 27.93 |
| GSMUA_Achr4P22260_001 | Banana | cytosol, extracellular | 49.19 | 27.85 |
| AT1G04750.1 | Thale cress | endoplasmic reticulum, golgi | 49.19 | 27.85 |
| OQU90815 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 49.19 | 27.73 |
| GSMUA_Achr7P01760_001 | Banana | plasma membrane | 48.39 | 27.4 |
| AT2G33120.2 | Thale cress | golgi | 49.19 | 26.64 |
| TraesCS5D01G459900.1 | Wheat | vacuole | 47.58 | 26.58 |
| TraesCS5B01G457700.1 | Wheat | vacuole | 47.58 | 26.58 |
| TraesCS5A01G449900.1 | Wheat | unclear | 47.58 | 26.46 |
| HORVU5Hr1G107510.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 47.58 | 26.46 |
| Zm00001d019091_P002 | Maize | vacuole | 49.19 | 23.37 |
| AT2G32670.1 | Thale cress | endoplasmic reticulum, golgi | 52.42 | 22.81 |
| GSMUA_Achr8P03260_001 | Banana | cytosol, mitochondrion, plasma membrane, plastid | 37.9 | 21.36 |
| Zm00001d013055_P002 | Maize | extracellular, plasma membrane | 40.32 | 21.19 |
| AT3G54300.3 | Thale cress | cytosol | 38.71 | 20.0 |
| AT2G33110.1 | Thale cress | extracellular, golgi | 34.68 | 19.82 |
| AT4G15780.1 | Thale cress | cytosol | 28.23 | 19.02 |
| AT5G22360.1 | Thale cress | plasma membrane | 25.81 | 14.48 |
| AT4G32150.1 | Thale cress | golgi, plasma membrane | 25.0 | 14.16 |
| AT5G11150.2 | Thale cress | golgi, plasma membrane | 24.19 | 13.27 |
| AT2G25340.1 | Thale cress | endoplasmic reticulum, plasma membrane | 22.58 | 12.79 |
| PGSC0003DMT400043452 | Potato | cytosol | 36.29 | 12.2 |
| TraesCS3B01G193500.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 40.32 | 11.16 |
| Solyc12g098170.1.1 | Tomato | cytosol | 9.68 | 3.93 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.5.1 | EntrezGene:822087 | ProteinID:AEE76959.1 | ArrayExpress:AT3G24890 | EnsemblPlantsGene:AT3G24890 |
| RefSeq:AT3G24890 | TAIR:AT3G24890 | RefSeq:AT3G24890-TAIR-G | EnsemblPlants:AT3G24890.2 | TAIR:AT3G24890.2 | Symbol:ATVAMP728 |
| Unigene:At.50842 | UniProt:F4J7T4 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | InterPro:IPR001388 | RefSeq:NP_001189966.1 | PFAM:PF00957 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS50892 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF120 | SUPFAM:SSF58038 | InterPro:Synaptobrevin | UniParc:UPI0001E92EC2 |
| Symbol:VAMP728 | : | : | : | : | : |
Description
VAMP728Vesicle-associated membrane protein 728 [Source:UniProtKB/TrEMBL;Acc:F4J7T4]
Coordinates
chr3:+:9097514..9098945
Molecular Weight (calculated)
14529.2 Da
IEP (calculated)
10.904
GRAVY (calculated)
-0.298
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVDRNGYNY LTQQLEQRVL VLLAHPEEIS KLAKVKALVT KMKGVMMENI EKALDRSEKI KILVDLRSKY SNLPFPSYGQ EDIITPGTKI TRKMWFQNMK
101: FKLIVLGTSS SRFVLITERR RRLR
101: FKLIVLGTSS SRFVLITERR RRLR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.