Factsheet for Solyc12g098170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043452	Potato	cytosol	69.51	57.45
CDY59643	Canola	extracellular	6.89	28.38
CDX79465	Canola	extracellular	6.23	22.09
Solyc12g098180.1.1	Tomato	cytosol, vacuole	13.11	18.1
CDY23767	Canola	extracellular	6.23	17.76
GSMUA_Achr7P01760_001	Banana	plasma membrane	12.46	17.35
CDY19154	Canola	cytosol	12.46	17.27
CDY48531	Canola	cytosol	12.46	17.27
CDX84731	Canola	cytosol	12.46	17.27
Bra022893.1-P	Field mustard	cytosol	12.46	17.27
Bra021804.1-P	Field mustard	cytosol	12.46	17.27
Os03t0803000-01	Rice	plasma membrane	12.46	17.27
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	12.13	16.89
GSMUA_Achr2P17740_001	Banana	cytosol	12.13	16.89
Solyc06g083530.2.1	Tomato	plastid	12.13	16.82
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.13	16.82
Os07t0194000-01	Rice	plasma membrane	12.13	16.82
EER96027	Sorghum	extracellular	12.13	16.67
Zm00001d007767_P001	Maize	extracellular	12.13	16.67
CDY15521	Canola	endoplasmic reticulum	11.8	16.44
GSMUA_Achr9P11030_001	Banana	cytosol	11.8	16.44
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	11.8	16.44
CDX86608	Canola	endoplasmic reticulum	11.8	16.44
VIT_05s0136g00290.t01	Wine grape	extracellular	11.8	16.36
CDY12188	Canola	cytosol	11.8	16.36
Bra005568.1-P	Field mustard	cytosol	11.8	16.36
TraesCS5D01G459900.1	Wheat	vacuole	11.8	16.22
TraesCS5B01G457700.1	Wheat	vacuole	11.8	16.22
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.8	16.14
TraesCS5A01G449900.1	Wheat	unclear	11.8	16.14
Bra030588.1-P	Field mustard	endoplasmic reticulum	11.48	15.98
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	11.48	15.98
Solyc09g061620.2.1	Tomato	nucleus, plastid	11.48	15.91
CDX89793	Canola	endoplasmic reticulum	11.48	15.91
CDY06150	Canola	cytosol	11.48	15.91
Bra032493.1-P	Field mustard	cytosol	11.48	15.91
Bra015345.1-P	Field mustard	endoplasmic reticulum	11.48	15.91
CDY10053	Canola	endoplasmic reticulum	11.48	15.91
CDY18254	Canola	endoplasmic reticulum	11.48	15.91
Solyc09g091610.2.1	Tomato	plastid	11.48	15.84
CDX79510	Canola	endoplasmic reticulum	11.48	15.77
Solyc02g069150.2.1	Tomato	nucleus	11.48	15.77
Bra022926.1-P	Field mustard	endoplasmic reticulum	11.48	15.77
CDX84702	Canola	endoplasmic reticulum	11.48	15.77
Bra005523.1-P	Field mustard	cytosol, extracellular	11.48	15.7
CDY17139	Canola	cytosol, extracellular	11.48	15.7
CDY19450	Canola	cytosol, extracellular	11.48	15.7
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	11.15	15.53
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	11.15	15.53
Solyc01g066940.2.1	Tomato	cytosol	10.49	14.48
Zm00001d013055_P002	Maize	extracellular, plasma membrane	11.15	14.41
Zm00001d019091_P002	Maize	vacuole	12.13	14.18
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	10.16	14.09
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	9.84	12.5
CDX79466	Canola	endoplasmic reticulum	6.56	11.36
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	5.9	10.78
CDY59642	Canola	endoplasmic reticulum	6.23	10.67
CDY19156	Canola	cytosol	4.59	9.72
AT3G24890.2	Thale cress	cytosol	3.93	9.68
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	5.9	8.18
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.49	7.14
Solyc06g074250.2.1	Tomato	endoplasmic reticulum, plasma membrane	5.9	6.9

Protein Annotations

EnsemblPlants:Solyc12g098170.1.1	EnsemblPlantsGene:Solyc12g098170.1	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR31790	PANTHER:PTHR31790:SF18
PFAM:PF07734	SUPFAM:SSF75011	TIGRFAMs:TIGR01640	UniParc:UPI000276A060	UniProt:K4DHJ1	MapMan:19.2.2.8.1.4.6

Description

No Description!

Coordinates

chr12:+:65806475..65807392

Molecular Weight (calculated)

35074.4 Da

IEP (calculated)

4.444

GRAVY (calculated)

-0.279

Length

305 amino acids

Sequence
(BLAST)

001: MSPFKSLDYE SPSSLEDHVD DDSAIVDLLY PSMDHQELES NNVEIIGSCN GLICLLLYNT NKISLWNPST RVSRDLPSLT CNFHDDCPIF NGFGYDWINN
101: TYKVVRGTSN GIVDVFSTSG ERWRRINQGF KDTSIIFDDQ EQGVFFNGTL HWLGYYNDIN EIKKEKTIVT FDLGQEIFGV MKQPMLEHDE NVNFHNVGVL
201: KGCLSLINKG NGLYCEIWVM KEYGVISSWM KLLVLDTNDF EHIGYVDPIC FTKNGELIVD NEGYQLVRYN IEKKTCQTLK NHNDDWFQQI VYVQSLVSPY
301: GNVIF

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.