Factsheet for Bra005568.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12188	Canola	cytosol	100.0	100.0
Bra022893.1-P	Field mustard	cytosol	96.36	96.36
Bra021804.1-P	Field mustard	cytosol	93.64	93.64
AT1G04760.2	Thale cress	cytosol	92.27	92.27
VIT_05s0136g00290.t01	Wine grape	extracellular	89.09	89.09
Os07t0194000-01	Rice	plasma membrane	88.18	88.18
Bra015345.1-P	Field mustard	endoplasmic reticulum	88.18	88.18
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	87.73	88.13
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	87.27	87.67
Bra022926.1-P	Field mustard	endoplasmic reticulum	87.73	86.94
Bra032493.1-P	Field mustard	cytosol	86.82	86.82
GSMUA_Achr7P01760_001	Banana	plasma membrane	86.36	86.76
Bra005523.1-P	Field mustard	cytosol, extracellular	87.73	86.55
EER96027	Sorghum	extracellular	87.27	86.49
Zm00001d007767_P001	Maize	extracellular	87.27	86.49
GSMUA_Achr9P11030_001	Banana	cytosol	85.91	86.3
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	85.91	86.3
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.91	85.91
Bra030588.1-P	Field mustard	endoplasmic reticulum	85.45	85.84
Os03t0803000-01	Rice	plasma membrane	85.45	85.45
GSMUA_Achr2P17740_001	Banana	cytosol	84.09	84.47
TraesCS5B01G457700.1	Wheat	vacuole	83.64	82.88
TraesCS5D01G459900.1	Wheat	vacuole	83.64	82.88
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.64	82.51
TraesCS5A01G449900.1	Wheat	unclear	83.64	82.51
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	79.09	79.45
Zm00001d019091_P002	Maize	vacuole	85.91	72.41
AT2G32670.1	Thale cress	endoplasmic reticulum, golgi	93.64	72.28
Zm00001d013055_P002	Maize	extracellular, plasma membrane	77.27	72.03
Bra033511.1-P	Field mustard	cytosol	71.36	70.72
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	67.27	67.27
Bra003177.1-P	Field mustard	cytosol	61.36	56.02
Bra014823.1-P	Field mustard	golgi	60.91	55.37
Bra007063.1-P	Field mustard	cytosol, plasma membrane	60.0	55.0
Bra038066.1-P	Field mustard	cytosol	49.55	53.96
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	39.09	39.27
Bra008987.1-P	Field mustard	mitochondrion	38.18	38.01
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	36.82	36.65
Bra020187.1-P	Field mustard	endoplasmic reticulum	35.91	35.75
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	70.91	34.82
PGSC0003DMT400043452	Potato	cytosol	51.36	30.62
Bra011325.1-P	Field mustard	endoplasmic reticulum	35.0	21.1
Solyc12g098170.1.1	Tomato	cytosol	16.36	11.8

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EnsemblPlantsGene:Bra005568	EnsemblPlants:Bra005568.1
EnsemblPlants:Bra005568.1-P	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M4CMY0
PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF120	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI00025475D0	SEG:seg	:	:	:

Description

AT1G04760 (E=2e-106) ATVAMP726, VAMP726 | ATVAMP726

Coordinates

chrA05:-:6271085..6272550

Molecular Weight (calculated)

24975.5 Da

IEP (calculated)

9.531

GRAVY (calculated)

-0.216

Length

220 amino acids

Sequence
(BLAST)

001: MGQQNLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLVE NGFTYCVVAV ESAGRQITMA FLERVKEDFN KRYGGGKATT
101: AKPNSLNKEF GSKLKGHMQY CVDHPEEINK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKIRRKMWWE NMKIKLIVLG
201: IIIALILIII LSVCHGFKCT

Best Arabidopsis Sequence Match ( AT1G04760.2 )
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT

Arabidopsis Description

VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.