Factsheet for Bra003177.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67594	Canola	cytosol	99.59	99.59
CDY07551	Canola	cytosol	98.34	98.75
Bra014823.1-P	Field mustard	golgi	95.85	95.45
Bra007063.1-P	Field mustard	cytosol, plasma membrane	95.02	95.42
AT3G54300.3	Thale cress	cytosol	94.61	95.0
KRH36005	Soybean	endoplasmic reticulum	87.55	88.66
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	87.14	87.5
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	86.31	86.67
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	83.4	84.1
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.84	79.83
KXG25383	Sorghum	plastid	74.27	74.27
Zm00001d031942_P003	Maize	plastid	73.44	73.44
Os08t0558600-01	Rice	extracellular	73.44	73.44
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	73.44	73.14
TraesCS7B01G181100.1	Wheat	cytosol, plastid	73.03	72.73
TraesCS7A01G279100.1	Wheat	cytosol, plastid	73.03	72.73
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.93	72.33
Bra015345.1-P	Field mustard	endoplasmic reticulum	56.02	61.36
Bra022893.1-P	Field mustard	cytosol	56.02	61.36
Bra005568.1-P	Field mustard	cytosol	56.02	61.36
Bra005523.1-P	Field mustard	cytosol, extracellular	56.43	60.99
Bra022926.1-P	Field mustard	endoplasmic reticulum	56.02	60.81
Bra030588.1-P	Field mustard	endoplasmic reticulum	55.19	60.73
Bra032493.1-P	Field mustard	cytosol	55.19	60.45
Bra021804.1-P	Field mustard	cytosol	54.77	60.0
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	49.38	54.34
Bra033511.1-P	Field mustard	cytosol	48.55	52.7
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	17.01	49.4
Bra038066.1-P	Field mustard	cytosol	33.61	40.1
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	32.37	35.62
Bra008987.1-P	Field mustard	mitochondrion	31.54	34.39
Bra020187.1-P	Field mustard	endoplasmic reticulum	31.12	33.94
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	30.29	33.03
Bra011325.1-P	Field mustard	endoplasmic reticulum	30.71	20.27

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	EnsemblPlantsGene:Bra003177	EnsemblPlants:Bra003177.1	EnsemblPlants:Bra003177.1-P
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M4CG44	PFAM:PF00957
PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136
PANTHER:PTHR21136:SF169	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI00025413D6	SEG:seg	:	:	:	:

Description

AT3G54300 (E=2e-125) ATVAMP727, VAMP727 | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)

Coordinates

chrA07:-:11699018..11701246

Molecular Weight (calculated)

27415.0 Da

IEP (calculated)

6.036

GRAVY (calculated)

-0.247

Length

241 amino acids

Sequence
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPYV FLERVKEDFK KRYGASIKND
101: EPHPLADDDD EDDDLFGDRF CIAYNLDREF GPILKEHMQY CMSHPEEMSK LSKLKAQITD VKGIMMDNIE KVLDRGEKIE LLVDKSENLQ FQADSFQRQG
201: RQLRRKMWIQ SLQMKLMVGG AILSFILIVW VVACGGFKCS S

Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS

Arabidopsis Description

VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.