Factsheet for Os08t0558600-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1
extracellular 3
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	90.04	89.67
TraesCS7B01G181100.1	Wheat	cytosol, plastid	90.04	89.67
TraesCS7A01G279100.1	Wheat	cytosol, plastid	90.04	89.67
KXG25383	Sorghum	plastid	89.63	89.63
Zm00001d031942_P003	Maize	plastid	89.21	89.21
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	79.25	80.25
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	78.01	78.66
KRH36005	Soybean	endoplasmic reticulum	76.76	77.73
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	75.93	76.25
AT3G54300.3	Thale cress	cytosol	74.69	75.0
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	74.69	75.0
CDX67594	Canola	cytosol	73.86	73.86
CDY07551	Canola	cytosol	73.44	73.75
Bra003177.1-P	Field mustard	cytosol	73.44	73.44
Bra007063.1-P	Field mustard	cytosol, plasma membrane	73.03	73.33
CDX76153	Canola	cytosol	73.44	73.14
CDX78228	Canola	cytosol, plasma membrane	72.61	72.92
CDX73490	Canola	plasma membrane	72.61	72.61
Bra014823.1-P	Field mustard	golgi	72.61	72.31
CDY13199	Canola	plasma membrane	55.6	67.34
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	21.99	63.86
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	66.81	63.64
Os07t0194000-01	Rice	plasma membrane	58.09	63.64
Os03t0803000-01	Rice	plasma membrane	56.02	61.36
Os03t0165800-01	Rice	plasma membrane	51.04	55.16
Os12t0639800-00	Rice	plasma membrane	48.96	53.88
Os07t0249200-01	Rice	cytosol	45.64	44.35
Os10t0154000-01	Rice	plasma membrane	31.95	34.07
Os06t0174400-01	Rice	plasma membrane	29.88	32.58
Os02t0803600-01	Rice	plasma membrane	30.29	32.3

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	EntrezGene:4346309	EMBL:AK066924	EMBL:AK104800
ProteinID:BAD13129.1	ProteinID:BAF24409.1	ProteinID:BAT06679.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0006623	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0007033
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0033263	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom
EnsemblPlantsGene:Os08g0558600	EnsemblPlants:Os08t0558600-01	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417
PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF169	UniProt:Q6YZI8	SMART:SM01270
SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI000023B0B7	RefSeq:XP_015649386.1
RefSeq:XP_015649387.1	SEG:seg	:	:	:	:

Description

Synaptobrevin domain containing protein. (Os08t0558600-01);Synaptobrevin domain containing protein. (Os08t0558600-02)

Coordinates

chr8:-:27956314..27958978

Molecular Weight (calculated)

27358.0 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.139

Length

241 amino acids

Sequence
(BLAST)

001: MNGNKQSLIY SFVAKGSVVL AEHTAFSGNF STIAVQCLQK LPPNTSKSTY SCDGHTFNFL VDRGFVFLVV ADEAVGRSVP FVFLDRVKED FMQRYGSSID
101: EEGQHPLADD ADDDDFLLED RFSIAYNLDR EFGPRLKDHM LYCINHPEEI SKLSKVKAHL TEVKGIMMDN IEKILERGEK IELLVGKTET LQSQADSFHR
201: HGRELRRKMW LQNLRFKLMV GGAVAALILF LWLIICGGFK C

Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS

Arabidopsis Description

VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.