CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76153	Canola	cytosol	87.94	72.31
CDX73490	Canola	plasma membrane	86.93	71.78
CDX78228	Canola	cytosol, plasma membrane	86.43	71.67
Bra014823.1-P	Field mustard	golgi	86.93	71.49
CDX67594	Canola	cytosol	85.93	70.95
CDY07551	Canola	cytosol	85.43	70.83
AT3G54300.3	Thale cress	cytosol	84.42	70.0
KRH36005	Soybean	endoplasmic reticulum	78.89	65.97
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	78.39	65.0
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	77.89	64.85
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	77.89	64.58
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.86	60.08
Os08t0558600-01	Rice	extracellular	67.34	55.6
KXG25383	Sorghum	plastid	66.83	55.19
Zm00001d031942_P003	Maize	plastid	66.33	54.77
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	66.33	54.55
TraesCS7B01G181100.1	Wheat	cytosol, plastid	66.33	54.55
TraesCS7A01G279100.1	Wheat	cytosol, plastid	65.83	54.13
CDY48527	Canola	cytosol	19.1	52.78
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.83	51.78
CDY15521	Canola	endoplasmic reticulum	52.26	47.49
CDX79510	Canola	endoplasmic reticulum	52.76	47.3
CDX86608	Canola	endoplasmic reticulum	51.76	47.03
CDY18254	Canola	endoplasmic reticulum	51.76	46.82
CDX89793	Canola	endoplasmic reticulum	51.76	46.82
CDY17139	Canola	cytosol, extracellular	52.26	46.64
CDY19450	Canola	cytosol, extracellular	52.26	46.64
CDX84702	Canola	endoplasmic reticulum	51.76	46.4
CDY12188	Canola	cytosol	51.26	46.36
CDY06150	Canola	cytosol	51.26	46.36
CDY10053	Canola	endoplasmic reticulum	50.75	45.91
CDX84731	Canola	cytosol	50.75	45.91
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	19.1	45.78
CDY19154	Canola	cytosol	50.25	45.45
CDY19156	Canola	cytosol	32.66	45.14
CDY48531	Canola	cytosol	49.75	45.0
CDX79466	Canola	endoplasmic reticulum	38.69	43.75
CDY44179	Canola	cytosol	46.73	41.89
CDY59643	Canola	extracellular	15.58	41.89
CDY59642	Canola	endoplasmic reticulum	37.19	41.57
CDY22900	Canola	cytosol, plasma membrane, plastid	46.23	41.44
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	45.23	41.1
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	31.16	37.13
CDY23767	Canola	extracellular	19.6	36.45
CDX79465	Canola	extracellular	15.08	34.88
CDY22757	Canola	cytosol	33.17	32.67
CDY61387	Canola	endoplasmic reticulum, plasma membrane	35.18	31.96
CDX75224	Canola	endoplasmic reticulum, plasma membrane	34.17	30.91
CDX68821	Canola	endoplasmic reticulum, plasma membrane	33.67	30.45
CDX69781	Canola	plasma membrane	33.17	29.86
CDX97084	Canola	plasma membrane	32.66	29.41
CDY09133	Canola	endoplasmic reticulum	31.16	28.05
CDX70999	Canola	endoplasmic reticulum	30.15	27.15
CDX88799	Canola	plasma membrane	29.65	26.7

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:A0A078FJR2	UniProt:A0A078FJR2	EnsemblPlants:CDY13199
ProteinID:CDY13199	ProteinID:CDY13199.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00071083001	InterPro:IPR001388	PFAM:PF00957	PRINTS:PR00219
ScanProsite:PS00417	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF169	SUPFAM:SSF58038	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI0004EDBD6B	:	:	:	:

Description

BnaC04g26360DBnaC04g26360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJR2]

Coordinates

chrLK032032:-:394927..397066

Molecular Weight (calculated)

22935.2 Da

IEP (calculated)

9.320

GRAVY (calculated)

-0.137

Length

199 amino acids

Sequence
(BLAST)

001: MSQQKGLIYS FVAKGTVVLA EHTPYSGNFS TIAVQCLQKL PKNSSKVYLL LRCPHLQFPC RKQWFRVSCD DDFFADRFSI AYNLDREFGP LLKEHMQFCM
101: SHPEEMSKLS KLKAHINDVK GIMMDNIDKV LDRGERIELL VDKTENLQFQ ADSFQRQGRQ LRRKMWIQSL QMKLMVGGAV LSFILIVWVV ACGGFKCSS

Best Arabidopsis Sequence Match ( AT1G04760.1 )
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT

Arabidopsis Description

VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.