Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006623.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 98.64 | 98.64 |
| CDX70999 | Canola | endoplasmic reticulum | 97.74 | 97.74 |
| CDY09133 | Canola | endoplasmic reticulum | 94.57 | 94.57 |
| AT5G22360.1 | Thale cress | plasma membrane | 93.21 | 93.21 |
| VIT_06s0080g00800.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 86.43 | 86.82 |
| KRH25265 | Soybean | plasma membrane | 84.16 | 84.55 |
| KRH30399 | Soybean | endoplasmic reticulum | 83.71 | 84.09 |
| Zm00001d052756_P001 | Maize | endoplasmic reticulum | 72.85 | 83.42 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 81.45 | 82.57 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 81.0 | 82.11 |
| EES13179 | Sorghum | endoplasmic reticulum, plasma membrane | 81.45 | 81.08 |
| TraesCS7D01G324800.1 | Wheat | plasma membrane | 81.0 | 80.63 |
| TraesCS7B01G228700.1 | Wheat | plasma membrane | 81.0 | 80.63 |
| TraesCS7A01G328000.1 | Wheat | plasma membrane | 81.0 | 80.63 |
| HORVU7Hr1G078500.1 | Barley | plasma membrane | 80.54 | 80.18 |
| Os10t0154000-01 | Rice | plasma membrane | 81.0 | 79.2 |
| PGSC0003DMT400015063 | Potato | plastid | 75.57 | 73.25 |
| Solyc06g074250.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 84.62 | 71.65 |
| CDY61387 | Canola | endoplasmic reticulum, plasma membrane | 55.2 | 55.71 |
| CDX75224 | Canola | endoplasmic reticulum, plasma membrane | 55.2 | 55.45 |
| CDX68821 | Canola | endoplasmic reticulum, plasma membrane | 55.2 | 55.45 |
| CDX69781 | Canola | plasma membrane | 53.39 | 53.39 |
| CDX97084 | Canola | plasma membrane | 52.49 | 52.49 |
| CDY15521 | Canola | endoplasmic reticulum | 39.37 | 39.73 |
| CDX86608 | Canola | endoplasmic reticulum | 38.91 | 39.27 |
| CDY06150 | Canola | cytosol | 38.91 | 39.09 |
| CDY10053 | Canola | endoplasmic reticulum | 38.46 | 38.64 |
| CDX84702 | Canola | endoplasmic reticulum | 38.46 | 38.29 |
| CDY19450 | Canola | cytosol, extracellular | 38.01 | 37.67 |
| CDY17139 | Canola | cytosol, extracellular | 38.01 | 37.67 |
| CDX79510 | Canola | endoplasmic reticulum | 37.56 | 37.39 |
| CDY18254 | Canola | endoplasmic reticulum | 37.1 | 37.27 |
| CDX89793 | Canola | endoplasmic reticulum | 37.1 | 37.27 |
| CDX79466 | Canola | endoplasmic reticulum | 29.41 | 36.93 |
| CDY19154 | Canola | cytosol | 36.65 | 36.82 |
| CDY12188 | Canola | cytosol | 36.65 | 36.82 |
| CDX84731 | Canola | cytosol | 36.65 | 36.82 |
| CDY37751 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 35.75 | 36.07 |
| CDY48531 | Canola | cytosol | 35.75 | 35.91 |
| CDY23768 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 26.24 | 34.73 |
| CDY19156 | Canola | cytosol | 22.62 | 34.72 |
| CDY48527 | Canola | cytosol | 11.31 | 34.72 |
| CDY44179 | Canola | cytosol | 33.03 | 32.88 |
| CDY59642 | Canola | endoplasmic reticulum | 26.24 | 32.58 |
| CDY59643 | Canola | extracellular | 10.86 | 32.43 |
| CDY22900 | Canola | cytosol, plasma membrane, plastid | 32.58 | 32.43 |
| CDX79465 | Canola | extracellular | 12.22 | 31.4 |
| CDX76153 | Canola | cytosol | 33.94 | 30.99 |
| CDY07551 | Canola | cytosol | 33.48 | 30.83 |
| CDX67594 | Canola | cytosol | 33.03 | 30.29 |
| CDX73490 | Canola | plasma membrane | 33.03 | 30.29 |
| CDY13199 | Canola | plasma membrane | 26.7 | 29.65 |
| CDX78228 | Canola | cytosol, plasma membrane | 32.13 | 29.58 |
| CDY23767 | Canola | extracellular | 13.12 | 27.1 |
| CDY22757 | Canola | cytosol | 23.53 | 25.74 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | GO:A0A078DJI4 | EnsemblPlants:CDX88799 | ProteinID:CDX88799 |
| ProteinID:CDX88799.1 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016192 | EnsemblPlantsGene:GSBRNA2T00148863001 | InterPro:IPR001388 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf | InterPro:Longin_dom |
| PFAM:PF00957 | PFAM:PF13774 | PRINTS:PR00219 | ScanProsite:PS00417 | PFscan:PS50859 | PFscan:PS50892 |
| PANTHER:PTHR21136 | PANTHER:PTHR21136:SF165 | SMART:SM01270 | SUPFAM:SSF58038 | SUPFAM:SSF64356 | SignalP:SignalP-noTM |
| InterPro:Synaptobrevin | TMHMM:TMhelix | UniParc:UPI0004EED50F | SEG:seg | : | : |
Description
BnaA03g08500D
Coordinates
chrLK031856:+:990726..992161
Molecular Weight (calculated)
25234.9 Da
IEP (calculated)
8.983
GRAVY (calculated)
0.084
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIIYAVVAR ATVVLAEFSA VTGNSGAVVR RILEKLSPET ADERLCFSQD GYIFHILRSD GLTFLCMAND TFGRRIPFSY LEDIHMRFMK NYGRVAHHAP
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDNS FHFRKQSKRL RRALWMKNAK LLLVLTCLIV
201: LVLYIIIASF CGGITLPSCR S
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDNS FHFRKQSKRL RRALWMKNAK LLLVLTCLIV
201: LVLYIIIASF CGGITLPSCR S
001: MAIVYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPEI SDERLCFSQD RYIFHILRSD GLTFLCMAND TFGRRVPFSY LEEIHMRFMK NYGKVAHNAP
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL RRALWMKNAK LLVLLTCLIV
201: FLLYIIIASF CGGITLPSCR S
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL RRALWMKNAK LLVLLTCLIV
201: FLLYIIIASF CGGITLPSCR S
Arabidopsis Description
VAMP714Vesicle-associated membrane protein 714 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMR5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.