Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 4
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75224 | Canola | endoplasmic reticulum, plasma membrane | 98.64 | 98.64 |
| CDY61387 | Canola | endoplasmic reticulum, plasma membrane | 95.91 | 96.35 |
| AT4G32150.1 | Thale cress | golgi, plasma membrane | 92.73 | 93.15 |
| CDX69781 | Canola | plasma membrane | 84.09 | 83.71 |
| VIT_04s0008g05650.t01 | Wine grape | extracellular | 83.64 | 83.64 |
| KRH73537 | Soybean | endoplasmic reticulum | 82.73 | 83.11 |
| KRH14588 | Soybean | endoplasmic reticulum | 82.27 | 82.65 |
| CDX97084 | Canola | plasma membrane | 82.73 | 82.35 |
| PGSC0003DMT400067225 | Potato | mitochondrion | 80.91 | 80.91 |
| Solyc06g065950.2.1 | Tomato | endoplasmic reticulum, nucleus | 80.91 | 80.91 |
| GSMUA_Achr6P35140_001 | Banana | plasma membrane | 79.09 | 79.09 |
| GSMUA_Achr9P09180_001 | Banana | endoplasmic reticulum, plasma membrane | 78.64 | 78.64 |
| OQU75937 | Sorghum | plasma membrane | 74.09 | 73.76 |
| TraesCS7A01G136300.1 | Wheat | plasma membrane, plastid | 71.82 | 71.49 |
| TraesCS7B01G037300.1 | Wheat | plasma membrane, plastid | 71.82 | 71.49 |
| Os06t0174400-01 | Rice | plasma membrane | 71.82 | 71.49 |
| TraesCS7D01G136300.1 | Wheat | endoplasmic reticulum, plasma membrane | 71.36 | 71.04 |
| Os02t0803600-01 | Rice | plasma membrane | 70.0 | 68.14 |
| KRH03646 | Soybean | plasma membrane | 67.73 | 66.22 |
| KRH20159 | Soybean | plastid | 67.27 | 66.07 |
| EES05972 | Sorghum | cytosol | 67.73 | 65.35 |
| TraesCS6A01G371800.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 69.09 | 65.24 |
| TraesCS6D01G355800.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 68.64 | 64.81 |
| TraesCS6B01G409400.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 68.64 | 64.81 |
| Zm00001d037483_P002 | Maize | plasma membrane | 74.55 | 64.57 |
| Zm00001d018408_P001 | Maize | cytosol | 65.91 | 64.16 |
| HORVU7Hr1G028250.1 | Barley | peroxisome, plasma membrane | 70.0 | 62.6 |
| CDY09133 | Canola | endoplasmic reticulum | 55.45 | 55.2 |
| CDX88799 | Canola | plasma membrane | 55.45 | 55.2 |
| CDX70999 | Canola | endoplasmic reticulum | 55.0 | 54.75 |
| Bra011325.1-P | Field mustard | endoplasmic reticulum | 88.18 | 53.15 |
| CDX86608 | Canola | endoplasmic reticulum | 39.09 | 39.27 |
| CDY15521 | Canola | endoplasmic reticulum | 39.09 | 39.27 |
| CDX79466 | Canola | endoplasmic reticulum | 30.91 | 38.64 |
| CDX89793 | Canola | endoplasmic reticulum | 38.64 | 38.64 |
| CDY18254 | Canola | endoplasmic reticulum | 38.64 | 38.64 |
| CDY06150 | Canola | cytosol | 38.18 | 38.18 |
| CDX79510 | Canola | endoplasmic reticulum | 37.73 | 37.39 |
| CDY10053 | Canola | endoplasmic reticulum | 37.27 | 37.27 |
| CDY12188 | Canola | cytosol | 37.27 | 37.27 |
| CDY19450 | Canola | cytosol, extracellular | 37.73 | 37.22 |
| CDY17139 | Canola | cytosol, extracellular | 37.73 | 37.22 |
| CDX84702 | Canola | endoplasmic reticulum | 37.27 | 36.94 |
| CDX84731 | Canola | cytosol | 36.82 | 36.82 |
| CDY19156 | Canola | cytosol | 24.09 | 36.81 |
| CDY19154 | Canola | cytosol | 36.36 | 36.36 |
| CDY37751 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 35.91 | 36.07 |
| CDY48531 | Canola | cytosol | 35.45 | 35.45 |
| CDY59642 | Canola | endoplasmic reticulum | 28.18 | 34.83 |
| CDY48527 | Canola | cytosol | 11.36 | 34.72 |
| CDY13199 | Canola | plasma membrane | 30.45 | 33.67 |
| CDY23768 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 25.45 | 33.53 |
| CDY44179 | Canola | cytosol | 33.64 | 33.33 |
| CDY22900 | Canola | cytosol, plasma membrane, plastid | 33.18 | 32.88 |
| CDX76153 | Canola | cytosol | 35.45 | 32.23 |
| CDY07551 | Canola | cytosol | 35.0 | 32.08 |
| CDX73490 | Canola | plasma membrane | 35.0 | 31.95 |
| CDX78228 | Canola | cytosol, plasma membrane | 34.55 | 31.67 |
| CDX67594 | Canola | cytosol | 34.55 | 31.54 |
| CDY59643 | Canola | extracellular | 10.45 | 31.08 |
| CDY23767 | Canola | extracellular | 13.18 | 27.1 |
| CDX79465 | Canola | extracellular | 10.45 | 26.74 |
| CDY22757 | Canola | cytosol | 23.18 | 25.25 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | GO:A0A078BVH4 | EnsemblPlants:CDX68821 | ProteinID:CDX68821 |
| ProteinID:CDX68821.1 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016192 | EnsemblPlantsGene:GSBRNA2T00130541001 | InterPro:IPR001388 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf | InterPro:Longin_dom |
| PFAM:PF00957 | PFAM:PF13774 | PRINTS:PR00219 | ScanProsite:PS00417 | PFscan:PS50859 | PFscan:PS50892 |
| PANTHER:PTHR21136 | PANTHER:PTHR21136:SF104 | SMART:SM01270 | SUPFAM:SSF58038 | SUPFAM:SSF64356 | SignalP:SignalP-noTM |
| InterPro:Synaptobrevin | TMHMM:TMhelix | UniParc:UPI0004EC48A3 | SEG:seg | : | : |
Description
BnaC01g06320D
Coordinates
chrLK031789:-:1429933..1431258
Molecular Weight (calculated)
25259.6 Da
IEP (calculated)
9.386
GRAVY (calculated)
-0.081
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MAILYALVAR GTVVLAEFTA TSTNASTIAK QILEKVHGNN NDSNVSYSQD RYVFHVKRTD GLTVLCMAEE TAGRRIPFTF LEDIHQRFVR TYGRAVHTAQ
101: AYAMNDEFSR VLSQQIEYYS NDPNADRINR IKGEMSQVRD VMIENIDKVL DRGERLELLV DKTATMQGNT FRFRKQARRF RSTVWWRNCK LTFLLILVLL
201: VIIYIAVAFV CHGPLLPSCI
101: AYAMNDEFSR VLSQQIEYYS NDPNADRINR IKGEMSQVRD VMIENIDKVL DRGERLELLV DKTATMQGNT FRFRKQARRF RSTVWWRNCK LTFLLILVLL
201: VIIYIAVAFV CHGPLLPSCI
001: MAILYALVAR GTVVLSEFTA TSTNASTIAK QILEKVPGDN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTALA
101: YAMNEEFSRV LSQQIDYYSN DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR SNVWWRNCKL TVLLILLLLV
201: IIYIAVAFLC HGPTLPSCI
101: YAMNEEFSRV LSQQIDYYSN DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR SNVWWRNCKL TVLLILLLLV
201: IIYIAVAFLC HGPTLPSCI
Arabidopsis Description
VAMP711Vesicle-associated membrane protein 711 [Source:UniProtKB/Swiss-Prot;Acc:O49377]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.