Factsheet for Zm00001d018408_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008333_P003
Zm00001d017756_P001
Zm00001d039536_P001
Zm00001d040286_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	Zm00001d008333_P003	AT5G46860.1	24556609
AT4G32150.1	Zm00001d017756_P001	AT5G46860.1	24556609
AT4G32150.1	Zm00001d039536_P001	AT5G46860.1	24556609
AT4G32150.1	Zm00001d040286_P003	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05972	Sorghum	cytosol	93.36	92.54
Os02t0803600-01	Rice	plasma membrane	82.3	82.3
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	79.65	77.25
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	79.2	76.82
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	78.76	76.39
Zm00001d037483_P002	Maize	plasma membrane	78.32	69.69
VIT_04s0008g05650.t01	Wine grape	extracellular	67.7	69.55
GSMUA_Achr6P35140_001	Banana	plasma membrane	67.7	69.55
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	67.26	69.09
PGSC0003DMT400067225	Potato	mitochondrion	66.37	68.18
KRH73537	Soybean	endoplasmic reticulum	65.93	68.04
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	65.93	67.73
KRH14588	Soybean	endoplasmic reticulum	65.49	67.58
AT4G32150.1	Thale cress	golgi, plasma membrane	64.6	66.67
CDY61387	Canola	endoplasmic reticulum, plasma membrane	64.6	66.67
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	64.6	66.67
CDX75224	Canola	endoplasmic reticulum, plasma membrane	64.6	66.36
CDX69781	Canola	plasma membrane	64.6	66.06
CDX68821	Canola	endoplasmic reticulum, plasma membrane	64.16	65.91
CDX97084	Canola	plasma membrane	64.16	65.61
Bra008987.1-P	Field mustard	mitochondrion	63.27	64.71
AT2G25340.1	Thale cress	endoplasmic reticulum, plasma membrane	61.95	63.93
KRH03646	Soybean	plasma membrane	62.39	62.67
KRH20159	Soybean	plastid	61.5	62.05
AT5G11150.2	Thale cress	golgi, plasma membrane	61.06	61.06
Zm00001d052756_P001	Maize	endoplasmic reticulum	48.23	56.48
Bra011325.1-P	Field mustard	endoplasmic reticulum	61.95	38.36
Zm00001d007767_P001	Maize	extracellular	34.96	35.59
Zm00001d027808_P001	Maize	cytosol, mitochondrion	34.07	34.84
Zm00001d031942_P003	Maize	plastid	34.96	32.78
Zm00001d019091_P002	Maize	vacuole	34.51	29.89
Zm00001d005468_P001	Maize	cytosol	31.86	28.46
Zm00001d013055_P002	Maize	extracellular, plasma membrane	29.65	28.39
Zm00001d019298_P002	Maize	cytosol	31.42	28.06
Zm00001d034505_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.65	23.51
Zm00001d053132_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	13.27	22.39
Zm00001d048443_P002	Maize	peroxisome	30.09	21.94

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100272623	MapMan:22.7.5.1	Gene3D:3.30.450.50	ProteinID:AQK75882.1	UniProt:B4FPM8
EMBL:BT039066	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957
PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136
PANTHER:PTHR21136:SF104	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI00017B823A	EnsemblPlantsGene:Zm00001d018408	EnsemblPlants:Zm00001d018408_P001	EnsemblPlants:Zm00001d018408_T001	SEG:seg	:

Description

Vesicle-associated membrane protein 711

Coordinates

chr5:+:220203398..220205096

Molecular Weight (calculated)

25263.6 Da

IEP (calculated)

8.867

GRAVY (calculated)

-0.074

Length

226 amino acids

Sequence
(BLAST)

001: MGKIEYGVVA RGAVVLAEHY GAAAAGGNAG AVARQVLERL PGGGDDDCNV SYTQDLHVFH VKRTDGLTAL CMADDAAGRR VPFAFLEDIH GRFVKAYGRA
101: ALTALAYAMN DEFSRVLAQQ MDYYSNDASA DRINRMRGEM DQVRSVMMDN IDRVLERGDR LEVLVDKTAT MQGNTMRFKR QARRFRNTMW WRNVKLTAAV
201: IFILTVIVYV LLAYMCRGFT IPSCFP

Best Arabidopsis Sequence Match ( AT4G32150.1 )
(BLAST)

001: MAILYALVAR GTVVLSEFTA TSTNASTIAK QILEKVPGDN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTALA
101: YAMNEEFSRV LSQQIDYYSN DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR SNVWWRNCKL TVLLILLLLV
201: IIYIAVAFLC HGPTLPSCI

Arabidopsis Description

VAMP711Vesicle-associated membrane protein 711 [Source:UniProtKB/Swiss-Prot;Acc:O49377]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.