Factsheet for TraesCS6B01G409400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

mitochondrion 3
peroxisome 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G175000.1
TraesCS3D01G180500.1
TraesCS6A01G271000.1
TraesCS6B01G298100.3
TraesCS6D01G244100.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	TraesCS3A01G175000.1	AT5G46860.1	24556609
AT4G32150.1	TraesCS3D01G180500.1	AT5G46860.1	24556609
AT4G32150.1	TraesCS6A01G271000.1	AT5G46860.1	24556609
AT4G32150.1	TraesCS6B01G298100.3	AT5G46860.1	24556609
AT4G32150.1	TraesCS6D01G244100.2	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	99.14	99.14
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	99.14	99.14
Os02t0803600-01	Rice	plasma membrane	78.54	80.97
EES05972	Sorghum	cytosol	78.11	79.82
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	75.11	79.19
Zm00001d018408_P001	Maize	cytosol	76.39	78.76
GSMUA_Achr6P35140_001	Banana	plasma membrane	69.53	73.64
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	66.95	70.91
VIT_04s0008g05650.t01	Wine grape	extracellular	66.52	70.45
KRH73537	Soybean	endoplasmic reticulum	65.67	69.86
KRH14588	Soybean	endoplasmic reticulum	65.24	69.41
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	64.81	68.64
CDX68821	Canola	endoplasmic reticulum, plasma membrane	64.81	68.64
CDY61387	Canola	endoplasmic reticulum, plasma membrane	63.95	68.04
AT4G32150.1	Thale cress	golgi, plasma membrane	63.95	68.04
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	63.95	68.04
CDX75224	Canola	endoplasmic reticulum, plasma membrane	63.95	67.73
PGSC0003DMT400067225	Potato	mitochondrion	63.95	67.73
AT2G25340.1	Thale cress	endoplasmic reticulum, plasma membrane	63.09	67.12
CDX97084	Canola	plasma membrane	60.94	64.25
CDX69781	Canola	plasma membrane	60.94	64.25
KRH03646	Soybean	plasma membrane	61.37	63.56
Bra008987.1-P	Field mustard	mitochondrion	59.66	62.9
KRH20159	Soybean	plastid	59.66	62.05
AT5G11150.2	Thale cress	golgi, plasma membrane	59.23	61.06
TraesCS7B01G228700.1	Wheat	plasma membrane	47.64	50.0
Bra011325.1-P	Field mustard	endoplasmic reticulum	57.94	36.99
TraesCS5B01G457700.1	Wheat	vacuole	31.76	33.33
TraesCS4B01G281700.1	Wheat	cytosol	31.76	29.13
TraesCS7B01G181100.1	Wheat	cytosol, plastid	30.04	28.93
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.47	15.85

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf
InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF104	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G409400	EnsemblPlants:TraesCS6B01G409400.1	TIGR:cd15843	SEG:seg	:

Description

No Description!

Coordinates

chr6B:-:683563609..683569859

Molecular Weight (calculated)

25843.5 Da

IEP (calculated)

9.547

GRAVY (calculated)

0.002

Length

233 amino acids

Sequence
(BLAST)

001: MGKKIQYAVV ARGAAVLAEH GAGGTTTNAG AVARQILERL HAAGGGAAAD CRVSYTQGLY VFHVMRADGL TALCMTDDDA TAASGRRIPF VFLEDIHGKF
101: VKTYGRAALT ALAYAMNDEF SRVLSKQMDY YSNDPNADCI TRMKGEMDQV RSIMIDNIDK VLERGDRLEM LVDKTTTMQG NTMRFKRQAR RFRNTVWWRN
201: VKLTAAVILI LLAIIYIVLA YMCHGFTLPS CVR

Best Arabidopsis Sequence Match ( AT2G25340.1 )
(BLAST)

001: MSILYALVAR GTVVLAELST TSTNASTIAK QILEKIPGNG DSHVSYSQDR YVFHVKRTDG LTVLCMADED AGRRIPFSFL EDIHQRFVRT YGRAIHSAQA
101: YAMNDEFSRV LNQQIEYYSN DPNADTISRI KGEMNQVRDV MIENIDNILD RGERLELLVD KTANMQGNTF RFRKQTRRFN NTVWWRNCKL TLLLILVLLV
201: IIYIGVAFAC HGPTLPSCV

Arabidopsis Description

VAMP712VAMP712 [Source:UniProtKB/TrEMBL;Acc:A0A178VTB3]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.