Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G180500.1 | Wheat | cytosol | 96.03 | 96.03 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 93.86 | 93.86 |
| EES02705 | Sorghum | cytosol | 89.17 | 88.21 |
| Os01t0254900-01 | Rice | plasma membrane | 87.73 | 86.79 |
| CDY33485 | Canola | cytosol | 71.48 | 73.33 |
| Bra024989.1-P | Field mustard | cytosol | 71.48 | 73.33 |
| KRH07476 | Soybean | cytosol | 72.2 | 73.26 |
| KRH07229 | Soybean | endoplasmic reticulum | 72.2 | 73.26 |
| AT5G46860.1 | Thale cress | cytosol | 70.76 | 73.13 |
| CDX77702 | Canola | cytosol | 71.48 | 73.06 |
| Bra022073.1-P | Field mustard | cytosol | 70.04 | 72.66 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 71.84 | 72.63 |
| KRH74378 | Soybean | cytosol | 71.48 | 72.53 |
| CDY43620 | Canola | cytosol | 69.68 | 72.28 |
| CDY37158 | Canola | cytosol | 69.68 | 72.28 |
| KRH39570 | Soybean | cytosol | 71.12 | 72.16 |
| Solyc06g062360.2.1 | Tomato | cytosol | 71.12 | 72.16 |
| PGSC0003DMT400043211 | Potato | cytosol | 70.76 | 71.79 |
| Solyc08g076540.2.1 | Tomato | nucleus | 70.4 | 71.43 |
| Solyc11g066910.1.1 | Tomato | plastid | 70.04 | 71.06 |
| Zm00001d040286_P003 | Maize | cytosol | 76.53 | 70.9 |
| PGSC0003DMT400038357 | Potato | cytosol | 69.68 | 70.7 |
| Solyc08g005200.2.1 | Tomato | cytosol | 69.68 | 70.7 |
| CDY01290 | Canola | cytosol | 68.23 | 70.26 |
| Bra023256.1-P | Field mustard | cytosol | 66.43 | 69.96 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 69.68 | 69.18 |
| CDY01478 | Canola | cytosol | 68.95 | 68.95 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 67.87 | 68.86 |
| CDX93845 | Canola | cytosol | 65.34 | 68.82 |
| CDX90452 | Canola | cytosol | 68.95 | 68.7 |
| Bra012645.1-P | Field mustard | cytosol | 68.95 | 68.7 |
| CDX78796 | Canola | cytosol | 68.23 | 68.48 |
| Bra040178.1-P | Field mustard | cytosol | 68.23 | 68.48 |
| CDY60786 | Canola | cytosol | 66.43 | 67.4 |
| VIT_16s0039g01850.t01 | Wine grape | cytosol | 66.79 | 66.55 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 64.62 | 65.57 |
| CDY38084 | Canola | cytosol | 46.57 | 65.48 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 14.8 | 65.08 |
| AT4G17730.2 | Thale cress | cytosol | 61.01 | 64.5 |
| Bra006372.1-P | Field mustard | cytosol, plastid | 64.26 | 64.49 |
| CDX78712 | Canola | cytosol, plastid | 64.26 | 64.49 |
| CDX70720 | Canola | cytosol, plastid | 64.26 | 64.49 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 62.45 | 63.37 |
| CDY16976 | Canola | cytosol, plastid | 62.82 | 63.04 |
| Bra008592.1-P | Field mustard | cytosol, plastid | 61.01 | 60.57 |
| CDX69417 | Canola | cytosol, plastid | 60.65 | 60.22 |
| PGSC0003DMT400068230 | Potato | cytosol | 65.34 | 59.74 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 59.57 | 59.14 |
| Zm00001d008333_P003 | Maize | cytosol | 67.87 | 57.85 |
| PGSC0003DMT400045973 | Potato | cytosol | 25.63 | 52.99 |
| Solyc06g072760.2.1 | Tomato | cytosol | 53.43 | 52.3 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 49.1 | 50.56 |
| Zm00001d039536_P001 | Maize | cytosol | 47.65 | 50.19 |
| PGSC0003DMT400069241 | Potato | cytosol | 41.16 | 42.86 |
| TraesCS7A01G181800.1 | Wheat | cytosol | 35.74 | 37.79 |
| AT1G32270.1 | Thale cress | nucleus | 48.01 | 31.97 |
| CDY03181 | Canola | cytosol | 28.16 | 29.89 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF05739 | PFAM:PF14523 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF135 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| EnsemblPlantsGene:TraesCS3A01G175000 | EnsemblPlants:TraesCS3A01G175000.1 | TIGR:cd00179 | TIGR:cd15840 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:-:194804321..194808358
Molecular Weight (calculated)
30301.1 Da
IEP (calculated)
6.526
GRAVY (calculated)
-0.257
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGN GVRGTPRRNG RAAGAGAGSS QAVASGVFQI NTAVATFQRL VNTLGTPKDT PDLRDRIHKT RAHITQLVKD TSEKLKQASE ADHRLEATPT
101: KKIADAKLAK DFQAVLKEFQ KAQRLAVERE AAYAPFITQT GLPQSYNSTE MNNGADKLAE QRTQLLESRR QELVFLDNEI VFNEAIIEER DQGIQEIQHQ
201: ITEVNEIFKD LAVLVHDQGA MIDDIDTHID NSVAATAQAK GQLSKAAKTQ KSNSSLICLL MVIFGVVLLI VIIVLAA
101: KKIADAKLAK DFQAVLKEFQ KAQRLAVERE AAYAPFITQT GLPQSYNSTE MNNGADKLAE QRTQLLESRR QELVFLDNEI VFNEAIIEER DQGIQEIQHQ
201: ITEVNEIFKD LAVLVHDQGA MIDDIDTHID NSVAATAQAK GQLSKAAKTQ KSNSSLICLL MVIFGVVLLI VIIVLAA
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.