Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78796 | Canola | cytosol | 93.77 | 92.75 |
| CDY01478 | Canola | cytosol | 84.98 | 83.75 |
| AT4G17730.2 | Thale cress | cytosol | 79.12 | 82.44 |
| CDY33485 | Canola | cytosol | 79.85 | 80.74 |
| CDX77702 | Canola | cytosol | 79.85 | 80.44 |
| CDX90452 | Canola | cytosol | 81.32 | 79.86 |
| CDY43620 | Canola | cytosol | 76.19 | 77.9 |
| CDY37158 | Canola | cytosol | 75.82 | 77.53 |
| KRH07229 | Soybean | endoplasmic reticulum | 73.99 | 73.99 |
| KRH74378 | Soybean | cytosol | 73.26 | 73.26 |
| KRH39570 | Soybean | cytosol | 72.89 | 72.89 |
| KRH07476 | Soybean | cytosol | 72.89 | 72.89 |
| CDY01290 | Canola | cytosol | 69.96 | 71.0 |
| CDX93845 | Canola | cytosol | 67.03 | 69.58 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 67.03 | 67.03 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 67.77 | 66.79 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 67.4 | 66.43 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 67.4 | 66.43 |
| Os01t0254900-01 | Rice | plasma membrane | 67.77 | 66.07 |
| CDY38084 | Canola | cytosol | 47.25 | 65.48 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 66.3 | 64.87 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 64.84 | 64.84 |
| EES02705 | Sorghum | cytosol | 66.3 | 64.64 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 63.37 | 63.37 |
| CDY16976 | Canola | cytosol, plastid | 63.37 | 62.68 |
| CDX70720 | Canola | cytosol, plastid | 63.37 | 62.68 |
| CDX78712 | Canola | cytosol, plastid | 63.0 | 62.32 |
| CDX69417 | Canola | cytosol, plastid | 63.0 | 61.65 |
| Os02t0702800-01 | Rice | cytosol | 53.85 | 55.06 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 52.75 | 54.14 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 52.75 | 54.14 |
| Zm00001d040286_P003 | Maize | cytosol | 58.97 | 53.85 |
| EES05663 | Sorghum | cytosol | 48.35 | 49.25 |
| Zm00001d017756_P001 | Maize | extracellular | 44.69 | 49.19 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 51.65 | 48.29 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 47.25 | 47.96 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 46.89 | 46.21 |
| Zm00001d008333_P003 | Maize | cytosol | 50.92 | 42.77 |
| Zm00001d039536_P001 | Maize | cytosol | 35.9 | 37.26 |
| CDY03181 | Canola | cytosol | 28.57 | 29.89 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:A0A078J9N5 | UniProt:A0A078J9N5 | EnsemblPlants:CDY60786 |
| ProteinID:CDY60786 | ProteinID:CDY60786.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| EnsemblPlantsGene:GSBRNA2T00030080001 | InterPro:IPR000727 | PFAM:PF05739 | PFAM:PF14523 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF135 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EECAEC | SEG:seg |
Description
BnaCnng36920DBnaCnng36920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9N5]
Coordinates
chrLK033915:-:17886..19600
Molecular Weight (calculated)
29755.3 Da
IEP (calculated)
6.174
GRAVY (calculated)
-0.321
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGR GRSLASSRNT NGGGEGGGGG RQDTTQAVAS GIFQINTSVS SFQRLVNTLG TPKDTPELRD KLCVKDTAAK LKEASETDHQ RGVNQKKKIV
101: DAKLAKDFQS VLKEFQKAQR LAAERETVYA PLVTRPSPPS SYTASEIDVN ADKHQEQRAL LVESKRQELV LLDNEIAFND AVIEEREQGI EEIQQQIGEV
201: HEIFKDLAVL VHDQGTMIDD ISTHIDNSHA ATALGKSHLA KASKTQRSNS SLTCLLLVIF GIVLLIVIIV LAV
101: DAKLAKDFQS VLKEFQKAQR LAAERETVYA PLVTRPSPPS SYTASEIDVN ADKHQEQRAL LVESKRQELV LLDNEIAFND AVIEEREQGI EEIQQQIGEV
201: HEIFKDLAVL VHDQGTMIDD ISTHIDNSHA ATALGKSHLA KASKTQRSNS SLTCLLLVIF GIVLLIVIIV LAV
001: MSFQDLEAGR GRSLASSRNI NGGGSRQDTT QDVASGIFQI NTSVSTFHRL VNTLGTPKDT PELREKLHKT RLYIGQLVKD TSAKLKEASE TDHQRGVNQK
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILLCLISP SS
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILLCLISP SS
Arabidopsis Description
SYP23AT4G17730 protein [Source:UniProtKB/TrEMBL;Acc:A8MS65]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.