Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040178.1-P | Field mustard | cytosol | 99.28 | 99.28 |
| CDY60786 | Canola | cytosol | 92.75 | 93.77 |
| CDY01478 | Canola | cytosol | 88.04 | 87.73 |
| AT4G17730.2 | Thale cress | cytosol | 80.8 | 85.11 |
| CDY43620 | Canola | cytosol | 79.71 | 82.4 |
| CDX90452 | Canola | cytosol | 82.97 | 82.37 |
| CDY37158 | Canola | cytosol | 79.35 | 82.02 |
| CDY33485 | Canola | cytosol | 80.07 | 81.85 |
| CDX77702 | Canola | cytosol | 80.07 | 81.55 |
| KRH07229 | Soybean | endoplasmic reticulum | 77.17 | 78.02 |
| KRH74378 | Soybean | cytosol | 76.45 | 77.29 |
| KRH39570 | Soybean | cytosol | 76.09 | 76.92 |
| KRH07476 | Soybean | cytosol | 76.09 | 76.92 |
| CDY01290 | Canola | cytosol | 72.46 | 74.35 |
| CDX93845 | Canola | cytosol | 69.57 | 73.0 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 69.93 | 70.7 |
| Os01t0254900-01 | Rice | plasma membrane | 69.57 | 68.57 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 67.75 | 68.5 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 68.48 | 68.23 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 68.12 | 67.87 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 68.48 | 67.74 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 67.75 | 67.51 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 66.3 | 67.03 |
| EES02705 | Sorghum | cytosol | 67.03 | 66.07 |
| CDY38084 | Canola | cytosol | 47.1 | 65.99 |
| CDX70720 | Canola | cytosol, plastid | 65.58 | 65.58 |
| CDY16976 | Canola | cytosol, plastid | 65.58 | 65.58 |
| CDX78712 | Canola | cytosol, plastid | 65.22 | 65.22 |
| CDX69417 | Canola | cytosol, plastid | 65.22 | 64.52 |
| Os02t0702800-01 | Rice | cytosol | 55.43 | 57.3 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 53.62 | 55.64 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 53.62 | 55.64 |
| Zm00001d040286_P003 | Maize | cytosol | 60.14 | 55.52 |
| Zm00001d017756_P001 | Maize | extracellular | 46.38 | 51.61 |
| EES05663 | Sorghum | cytosol | 49.64 | 51.12 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 52.54 | 49.66 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 48.19 | 49.44 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 48.19 | 48.01 |
| Zm00001d008333_P003 | Maize | cytosol | 51.09 | 43.38 |
| Zm00001d039536_P001 | Maize | cytosol | 38.04 | 39.92 |
| CDY03181 | Canola | cytosol | 32.61 | 34.48 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:A0A078CNK7 | EnsemblPlants:CDX78796 | ProteinID:CDX78796 |
| ProteinID:CDX78796.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00131259001 | InterPro:IPR000727 | PFAM:PF05739 | PFAM:PF14523 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF135 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI0004EDEC66 | SEG:seg | : | : | : | : |
Description
BnaA01g08630D
Coordinates
chrLK031816:+:97883..99656
Molecular Weight (calculated)
30465.4 Da
IEP (calculated)
7.299
GRAVY (calculated)
-0.337
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGR GRSLASSRNI NGGGRQDTTQ AVASGIFQIN TSVSSFQRLV NTLGTPKDTP ELRDKLHKTR LQIGQLVKDT AAKLKEASET DHQRGVNQKK
101: KIVDAKLAKD FQSVLKEFQK AQRLAAERET VYAPLVTRPS PPSSYTPSEI DVKGDKHQEQ RALLVESKRQ ELVLLDNEIA FNEAVIEERE QGIEEIQQQI
201: GEVHEIFKDL AVLVHDQGTM IDDISTHIDN SHAATALGKS HLAKASKTQR SNSSLTCLLL VIFGIVLLIV IIVLAV
101: KIVDAKLAKD FQSVLKEFQK AQRLAAERET VYAPLVTRPS PPSSYTPSEI DVKGDKHQEQ RALLVESKRQ ELVLLDNEIA FNEAVIEERE QGIEEIQQQI
201: GEVHEIFKDL AVLVHDQGTM IDDISTHIDN SHAATALGKS HLAKASKTQR SNSSLTCLLL VIFGIVLLIV IIVLAV
001: MSFQDLEAGR GRSLASSRNI NGGGSRQDTT QDVASGIFQI NTSVSTFHRL VNTLGTPKDT PELREKLHKT RLYIGQLVKD TSAKLKEASE TDHQRGVNQK
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILLCLISP SS
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILLCLISP SS
Arabidopsis Description
SYP23AT4G17730 protein [Source:UniProtKB/TrEMBL;Acc:A8MS65]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.