CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084469	Potato	cytosol, golgi, mitochondrion, nucleus	10.73	44.44
CDY37158	Canola	cytosol	36.4	35.58
CDY43620	Canola	cytosol	36.02	35.21
CDY33485	Canola	cytosol	35.25	34.07
CDX77702	Canola	cytosol	35.25	33.95
CDX78796	Canola	cytosol	34.48	32.61
Solyc06g062360.2.1	Tomato	cytosol	34.1	32.6
Solyc08g076540.2.1	Tomato	nucleus	34.1	32.6
CDY01290	Canola	cytosol	33.33	32.34
CDX93845	Canola	cytosol	32.57	32.32
VIT_02s0012g01850.t01	Wine grape	cytosol	33.72	32.12
Solyc08g005200.2.1	Tomato	cytosol	33.33	31.87
Solyc11g066910.1.1	Tomato	plastid	32.57	31.14
CDY01478	Canola	cytosol	32.95	31.05
GSMUA_Achr5P04090_001	Banana	cytosol	32.18	30.11
Os01t0254900-01	Rice	plasma membrane	31.8	29.64
GSMUA_Achr4P20770_001	Banana	cytosol	30.65	29.3
GSMUA_Achr7P04850_001	Banana	cytosol	30.27	28.94
EES02705	Sorghum	cytosol	31.03	28.93
CDY60786	Canola	cytosol	29.89	28.57
GSMUA_Achr1P15580_001	Banana	cytosol	29.5	28.21
TraesCS3A01G175000.1	Wheat	cytosol	29.89	28.16
TraesCS3D01G180500.1	Wheat	cytosol	29.89	28.16
HORVU3Hr1G035380.1	Barley	cytosol	29.5	27.8
CDX90452	Canola	cytosol	29.12	27.34
CDY16976	Canola	cytosol, plastid	27.97	26.45
CDX78712	Canola	cytosol, plastid	27.2	25.72
CDX69417	Canola	cytosol, plastid	27.2	25.45
Zm00001d040286_P003	Maize	cytosol	29.12	25.42
CDX70720	Canola	cytosol, plastid	26.82	25.36
CDY38084	Canola	cytosol	16.48	21.83
Zm00001d039536_P001	Maize	cytosol	21.46	21.29
EES05663	Sorghum	cytosol	21.84	21.27
TraesCS6A01G271000.1	Wheat	cytosol	21.07	20.45
TraesCS6B01G298100.3	Wheat	cytosol	21.46	20.22
Zm00001d017756_P001	Maize	extracellular	19.16	20.16
Zm00001d008333_P003	Maize	cytosol	24.9	20.0
HORVU6Hr1G068640.1	Barley	cytosol	20.31	19.92
HORVU6Hr1G041590.1	Barley	cytosol	20.31	19.92
Os02t0702800-01	Rice	cytosol	20.31	19.85
TraesCS6D01G244100.2	Wheat	cytosol	21.07	18.84

Protein Annotations

EnsemblPlants:CDY03181	EnsemblPlantsGene:GSBRNA2T00115643001	Gene3D:1.20.58.70	PANTHER:PTHR19957	PANTHER:PTHR19957:SF138	ProteinID:CDY03181
ProteinID:CDY03181.1	SEG:seg	UniParc:UPI0004EF1A18	MapMan:35.1	:	:

Description

BnaC09g19750D

Coordinates

chrLK031941:+:232248..234762

Molecular Weight (calculated)

29811.1 Da

IEP (calculated)

10.331

GRAVY (calculated)

-0.436

Length

261 amino acids

Sequence
(BLAST)

001: MEMEGSKKMK PKMSSGFHFQ CSPGEFSRFR RWKKRKINGG GGRQDSTQGV AWGIFQINTG VSTFQRLVNR RSGHKTRLHI GQLVKDTSAS ETDHRTGVNY
101: IRRLQMLSLQ RTFKAVSKEK PLMLLSFLHL LVPLGRNKAV IEEREQQGIQ EIHNQIGEIN EICKDLAKIS VLTLTTLELQ LLKEDLSSHK PQTHTKIKLI
201: SDMLALGDIW HFFWNVFINE TWQSLVIGFK DRAQAVCGGE GEDHGYDRSP ATVFRVCYPS I

Best Arabidopsis Sequence Match ( AT5G46860.1 )
(BLAST)

001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA

Arabidopsis Description

SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.