Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400038357 | Potato | cytosol | 98.17 | 98.17 |
| Solyc06g062360.2.1 | Tomato | cytosol | 92.31 | 92.31 |
| KRH07229 | Soybean | endoplasmic reticulum | 90.84 | 90.84 |
| KRH07476 | Soybean | cytosol | 90.48 | 90.48 |
| Solyc08g005200.2.1 | Tomato | cytosol | 90.11 | 90.11 |
| Solyc11g066910.1.1 | Tomato | plastid | 90.11 | 90.11 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 89.38 | 89.05 |
| KRH74378 | Soybean | cytosol | 87.91 | 87.91 |
| KRH39570 | Soybean | cytosol | 87.18 | 87.18 |
| AT5G46860.1 | Thale cress | cytosol | 79.12 | 80.6 |
| Bra022073.1-P | Field mustard | cytosol | 77.66 | 79.4 |
| Bra024989.1-P | Field mustard | cytosol | 78.39 | 79.26 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 78.75 | 78.75 |
| Bra023256.1-P | Field mustard | cytosol | 75.46 | 78.33 |
| Bra040178.1-P | Field mustard | cytosol | 78.02 | 77.17 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 75.09 | 75.09 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 75.82 | 74.19 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 73.63 | 73.63 |
| EES02705 | Sorghum | cytosol | 75.46 | 73.57 |
| Os01t0254900-01 | Rice | plasma membrane | 75.09 | 73.21 |
| Bra012645.1-P | Field mustard | cytosol | 74.36 | 73.02 |
| AT4G17730.2 | Thale cress | cytosol | 69.6 | 72.52 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 72.16 | 71.12 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 71.43 | 70.4 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 71.06 | 70.04 |
| Zm00001d040286_P003 | Maize | cytosol | 65.57 | 59.87 |
| Os02t0702800-01 | Rice | cytosol | 57.88 | 59.18 |
| Zm00001d017756_P001 | Maize | extracellular | 50.92 | 56.05 |
| Solyc06g072760.2.1 | Tomato | cytosol | 57.88 | 55.83 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 54.21 | 55.64 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 54.21 | 55.64 |
| EES05663 | Sorghum | cytosol | 54.58 | 55.6 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 55.31 | 51.71 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 50.92 | 51.67 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 51.28 | 50.54 |
| Zm00001d008333_P003 | Maize | cytosol | 55.31 | 46.46 |
| Zm00001d039536_P001 | Maize | cytosol | 42.49 | 44.11 |
| CDY03181 | Canola | cytosol | 32.6 | 34.1 |
| AT1G32270.1 | Thale cress | nucleus | 50.18 | 32.93 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 |
| InterPro:IPR000727 | UniProt:K4CN16 | PFAM:PF05739 | PFAM:PF14523 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| EnsemblPlantsGene:Solyc08g076540.2 | EnsemblPlants:Solyc08g076540.2.1 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI0001EF06FD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:60525305..60529575
Molecular Weight (calculated)
29955.9 Da
IEP (calculated)
6.693
GRAVY (calculated)
-0.235
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGR PLGPRRGYMN GKQDPTQAVA SGIFQINTAV STFQRLVNTL GTPKDTPELR EKLHKTRVHI GQLVKDTSAK LKQASETDHR VEVSASKKIT
101: DAKLAKDFQA VLKEFQKAQR LAAERETAYT PFVPQAVLPS SYTASEIDVS SGKSPEQRAL LVESRRQEVL LLDNEIAFNE AIIEEREQGI QEIQQQIGEV
201: NEIFKDLAVL VHEQGAMIDD IGSNVENAHA ATAQGRSQLA KAAKTQRSNS SLTCLLLVIF GIVLLIVIVV LAA
101: DAKLAKDFQA VLKEFQKAQR LAAERETAYT PFVPQAVLPS SYTASEIDVS SGKSPEQRAL LVESRRQEVL LLDNEIAFNE AIIEEREQGI QEIQQQIGEV
201: NEIFKDLAVL VHEQGAMIDD IGSNVENAHA ATAQGRSQLA KAAKTQRSNS SLTCLLLVIF GIVLLIVIVV LAA
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.