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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, unclear

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 6
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, unclear
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:mitochondrion
 unclear: 26455813
endoplasmic reticulum: 29145071
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400051640 Potato extracellular 99.25 99.25
Solyc09g065330.2.1 Tomato nucleus 99.25 99.25
Solyc01g097870.2.1 Tomato mitochondrion 97.74 97.74
AT3G04920.1 Thale cress mitochondrion 91.73 91.73
AT5G28060.1 Thale cress mitochondrion 90.98 90.98
CDY59816 Canola mitochondrion 90.98 90.98
CDY50766 Canola mitochondrion 90.98 90.98
CDY41909 Canola mitochondrion 90.98 90.98
CDY30024 Canola mitochondrion 90.98 90.98
CDY21104 Canola mitochondrion 90.98 90.98
CDY00010 Canola extracellular 90.98 90.98
CDX86189 Canola mitochondrion 90.98 90.98
CDX80683 Canola mitochondrion 90.98 90.98
Bra040115.1-P Field mustard mitochondrion 90.98 90.98
Bra009989.1-P Field mustard mitochondrion 90.98 90.98
Bra036117.1-P Field mustard mitochondrion 90.98 90.98
CDY05587 Canola mitochondrion 90.23 90.23
CDY52499 Canola mitochondrion 90.23 90.23
Bra040415.1-P Field mustard mitochondrion 90.23 90.23
KRG96941 Soybean nucleus 92.48 89.78
VIT_14s0030g01620.t01 Wine grape mitochondrion 92.48 89.78
KRH34063 Soybean mitochondrion 91.73 89.05
VIT_07s0151g00900.t01 Wine grape mitochondrion 90.98 88.32
KRH68706 Soybean endoplasmic reticulum 90.98 88.32
GSMUA_AchrUn_... Banana mitochondrion 81.2 87.1
KRG92744 Soybean mitochondrion 88.72 85.51
GSMUA_Achr6P05510_001 Banana mitochondrion 87.97 84.78
GSMUA_Achr9P28760_001 Banana mitochondrion 87.97 84.78
GSMUA_Achr4P30950_001 Banana mitochondrion 78.95 84.68
CDX74161 Canola mitochondrion 61.65 84.54
GSMUA_Achr2P15660_001 Banana mitochondrion 87.22 84.06
Os06t0555400-01 Rice cytosol, mitochondrion 72.18 83.48
Zm00001d011741_P001 Maize plastid 85.71 83.21
Zm00001d043606_P001 Maize mitochondrion 84.96 82.48
Zm00001d016276_P002 Maize cytosol, mitochondrion 84.96 82.48
EES03542 Sorghum mitochondrion 84.96 82.48
EES06539 Sorghum mitochondrion, plastid 84.96 82.48
Zm00001d039246_P001 Maize mitochondrion 73.68 81.67
EER88512 Sorghum mitochondrion 83.46 81.02
KRH04217 Soybean mitochondrion 45.86 80.26
Os01t0723200-01 Rice nucleus 82.71 79.71
Os02t0229000-01 Rice nucleus 82.71 79.71
Zm00001d036985_P001 Maize mitochondrion, plastid 81.95 79.56
TraesCS7D01G366400.1 Wheat cytosol, mitochondrion 81.95 79.56
TraesCS7B01G271400.1 Wheat cytosol, mitochondrion 81.95 79.56
TraesCS7A01G356300.1 Wheat golgi, nucleus, unclear 81.2 78.83
TraesCS6B01G234000.1 Wheat golgi, unclear 79.7 77.37
KRH04214 Soybean cytosol 55.64 76.29
TraesCS3B01G320300.1 Wheat cytosol, mitochondrion 78.95 76.09
TraesCS3A01G286000.1 Wheat cytosol, mitochondrion 78.95 76.09
TraesCS3D01G285800.1 Wheat cytosol, mitochondrion 78.2 75.36
TraesCS6D01G177000.1 Wheat mitochondrion, plastid 80.45 74.31
HORVU3Hr1G068610.1 Barley mitochondrion 74.44 72.26
HORVU1Hr1G044880.1 Barley mitochondrion, plastid 55.64 69.81
HORVU7Hr1G088580.1 Barley mitochondrion, plastid 81.95 64.12
KRH64028 Soybean mitochondrion 63.91 61.59
HORVU6Hr1G044840.1 Barley plasma membrane 78.95 58.99
HORVU2Hr1G055560.3 Barley cytosol, mitochondrion 56.39 53.57
Zm00001d043381_P001 Maize cytosol 32.33 47.25
GSMUA_Achr8P20160_001 Banana mitochondrion 58.65 39.39
Protein Annotations
MapMan:17.1.3.1.25Gene3D:3.30.70.3370GO:GO:0000462GO:GO:0003674GO:GO:0003735GO:GO:0005198
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840
GO:GO:0006139GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0019538GO:GO:0022627GO:GO:0030529UniProt:K4CAS8HAMAP:MF_00545PFAM:PD006052
PFAM:PF01282ScanProsite:PS00529PANTHER:PTHR10496PANTHER:PTHR10496:SF5InterPro:Ribosomal_L23/L15e_core_dom_sfInterPro:Ribosomal_S24e
InterPro:Ribosomal_S24e_CSSUPFAM:SSF54189EnsemblPlantsGene:Solyc06g084230.2EnsemblPlants:Solyc06g084230.2.1UniParc:UPI000276B9B7SEG:seg
Description
40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:K4CAS8]
Coordinates
chr6:-:49411450..49414382
Molecular Weight (calculated)
15420.1 Da
IEP (calculated)
11.338
GRAVY (calculated)
-0.885
Length
133 amino acids
Sequence
(BLAST)
001: MADKAVTIRT RKFMTNRLLA RKQFIIDVLH PGRANVSKAE LKEKLSRMYE VKDPNAIFVF KFRTHFGGGK STGFGLIYDS VENAKKYEPK YRLIRNGLDT
101: KVEKSRKQMK ERKNRAKKIR GVKKTKAGDA KKK
Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)
001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK
Arabidopsis Description
RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.